Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq237 168 5e-37 >seq237 Length=72600 Score = 168 bits (186), Expect = 5e-37 Identities = 383/568 (67%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| || || |||||||| ||| | ||||| | |||||| || | ||| | | | Sbjct 66017 GTACACATGGGCGTCTCCAAGGGTATGGACGAGCTCTCCACAATCCAACCCAGCGCATTT 66076 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || | || || || || | |||||||| ||||| || || || ||||| ||||| Sbjct 66077 CGCGAGCAAAATAGTCAGCAGCGCATAGCTGGCAATGTTGAACGGGACGCCGAGACCCAT 66136 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 || | || ||||||||||||||| ||||| ||| || |||||| ||||| | Sbjct 66137 ATCGGCACTCCGCTGGTAGAGCTGACAACTGAGCTTCCCGCCGGCCACGTAGAACTGCGA 66196 Query 30076 CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30135 || | ||||||| || || || ||||| | | | | ||||||||| || |||| Sbjct 66197 CAGGACGTGGCATGGTGGCAGCGCCATCTCGGGGATGGCCACGGGGTTCCACGCACACAA 66256 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30195 || || |||| ||| ||||||||| |||| ||| ||| || | ||||| || Sbjct 66257 GAGCATTCGCCGGTCGCTTGGGTTGTTTCTGAGTGCGTCGACGATTTTCCGGAGCTGGTC 66316 Query 30196 CACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30254 || ||| | || | ||| || | | || || ||||| ||| ||||| |||| || Sbjct 66317 GACGCCCTTTCCAGTGTAATCATCGTCGCA-GTTGGTGTAGCTTGCGCCGAAGTGCCGCC 66375 Query 30255 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AAGCCCCTCT- 30311 | ||||| || ||||| ||||| ||||||||| || | | ||| ||||| | Sbjct 66376 ATTGGAAGCCATACACTGGTCCGAGGTCTCCC---TCACGTCGATCGGTGAGCCCAAGTG 66432 Query 30312 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCT 30371 ||| | | ||||| ||||| || ||||||| || || |||| ||| | | Sbjct 66433 AGTCGAGGTATTCTCTTGAACCATTTCCGTCCCATATGCGAACGTCCTTATCACGCAAAT 66492 Query 30372 CTTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30430 |||| || || | | | ||| | |||||| | ||||| || |||||| | |||| Sbjct 66493 GGTTGGCGTCGGT-GTCTCCCTGAATGAACCAGAAAAGCTCTTCGACGACGCCTCTCCAG 66551 Query 30431 AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 ||||| | ||||||||| || ||||||| Sbjct 66552 AAGACACGCTTGGTCGTCAGCAGGGGAA 66579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306968327756