Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=132159 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || |||||| |||| || ||| | || || ||||| |||||| | Sbjct 77754 GCTATGCAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAAGCA 77813 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | ||||| | |||| |||| |||||||||| ||||| || ||||| || Sbjct 77814 AACGATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGAC 77873 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | |||||| || || | || || | || | || || ||| Sbjct 77874 CAGCAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTAC 77933 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || | ||| |||| |||| |||||||| Sbjct 77934 AACATTCAGAAAGAAAGCACCCTTCACCTCGTTCTGCGGCTGCGTGGTGGCAT 77986 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||||||||| |||||| |||| || || || |||||| | Sbjct 77984 CATGCAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGGAAGCAAA 78043 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||| |||| |||||||||| ||||| || ||||| || || Sbjct 78044 CGATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCA 78103 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || || | || || | || | || || ||||| Sbjct 78104 GCAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAA 78163 Query 27167 CATTCAAAAGGA 27178 |||||| || || Sbjct 78164 CATTCAGAAAGA 78175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914632519360