Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq237 102 7e-17 >seq237 Length=72600 Score = 102 bits (112), Expect = 7e-17 Identities = 377/585 (64%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 6551 ATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAAC 6610 ||||| ||| ||| | ||| || || || | ||||| || ||||| ||| | ||||| Sbjct 66006 ATGTGATTCGTGTACACATGGGCGTCTCCAAGGGTATGGACGAGCTCTCCACAATCCAAC 66065 Query 6611 CCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 || || | |||| || || ||||| || || || |||||||||||||| || Sbjct 66066 CCAGCGCATTTCGCGAGCAAAATAGTCAGCAGCGCATAGCTGGCAATGTTGAACGGGACG 66125 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACG 6730 || | ||||| || | || || |||||||| || |||| ||| || ||| Sbjct 66126 CCGAGACCCATATCGGCACTCCGCTGGTAGAGCTGACAACTGAGCTTCCCGCCGGCCACG 66185 Query 6731 TAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTC 6790 ||||| || | ||| |||||| || || ||||||||| |||| || |||||| Sbjct 66186 TAGAACTGCGACAGGACGTGGCATGGTGGCAGCGCCATCTCGGGGATGGCCACGGGGTTC 66245 Query 6791 CACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC--AAGGTGTCGATCACGT 6848 ||||| |||| | || | | ||| ||||| | ||| | | ||||| | | Sbjct 66246 CACGCACACAAGAGCATTCGCCGGTCGCTTGGGTT--GTTTCTGAGTGCGTCGACGATTT 66303 Query 6849 ACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCC 6908 | | |||||||| | |||| ||| | || || | |||| || || | Sbjct 66304 TCCGGAGCTGGTCGACGCCCTTTCCAGTGTAATCATCGTCGCAGTTGGTGTAGCTTGCGC 66363 Query 6909 CAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA 6968 | ||||| | ||| ||||| || || || || || | ||| ||||| ||| | || Sbjct 66364 CGAAGTGCCGCCATTGGAAGCCATACACTGGTCCGAGGTCTCCCTCACGTCGATCGGTGA 66423 Query 6969 ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC-CCCCCGG 7027 ||| | ||| || | |||| || || | ||||||| || || || Sbjct 66424 GCCCAAGTGAGTCGAGGTATTCTCTTGAACCATTTCCGTCCCATATGCGAACGTCCTTAT 66483 Query 7028 GACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACG 7087 ||| | | |||| || ||| | ||| | |||||| | ||||| ||||| ||| Sbjct 66484 CACG-CAAATGGTTGGCGTCGGTGTCTCCCTGAATGAACCAGAAAAGCTCTTCGACGACG 66542 Query 7088 CCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCC 7132 || ||||| | ||||| || ||||||||||| || |||||| || Sbjct 66543 CCTCTCCAGAAGACACGCTTGGTCGTCAGCAG-GGGAATTCGGCC 66586 Score = 102 bits (112), Expect = 7e-17 Identities = 377/585 (64%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 || |||||| || ||||||||||| || ||||| | ||||| ||||| ||||| ||||| Sbjct 66586 GGCCGAATTCCC-CTGCTGACGACCAAGCGTGTCTTCTGGAGAGGCGTCGTCGAAGAGCT 66528 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGG-GTGAAGA 34331 | |||||| | ||| | ||| || |||| | | ||| || || | Sbjct 66527 TTTCTGGTTCATTCAGGGAGACACCGACGCCAACCATTTG-CGTGATAAGGACGTTCGCA 66469 Query 34332 TCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG 34391 | ||||||| | || || |||| | || ||| | ||| || | ||| | Sbjct 66468 TATGGGACGGAAATGGTTCAAGAGAATACCTCGACTCACTTGGGCTCACCGATCGACGTG 66409 Query 34392 AGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGG 34451 |||| ||| | || || || || || ||||| ||| | ||||| || || || Sbjct 66408 AGGGAGACCTCGGACCAGTGTATGGCTTCCAATGGCGGCACTTCGGCGCAAGCTACACCA 66349 Query 34452 GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511 |||| | || || | ||| |||| | |||||||| | | | | ||||| | Sbjct 66348 ACTGCGACGATGATTACACTGGAAAGGGCGTCGACCAGCTCCGGAAAATCGTCGACGCAC 66289 Query 34512 T--GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | ||| | ||||| ||| | | || | |||| ||||||||||| || | Sbjct 66288 TCAGAAAC--AACCCAAGCGACCGGCGAATGCTCTTGTGTGCGTGGAACCCCGTGGCCAT 66231 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629 ||| ||||||||| || || |||||| ||| | || |||||||| || ||| | Sbjct 66230 CCCCGAGATGGCGCTGCCACCATGCCACGTCCTGTCGCAGTTCTACGTGGCCGGCGGGAA 66171 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 ||| || |||||||| || || | || ||||| | || || ||||||||||| Sbjct 66170 GCTCAGTTGTCAGCTCTACCAGCGGAGTGCCGATATGGGTCTCGGCGTCCCGTTCAACAT 66111 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGA 34749 ||| || || || ||||| || || |||| | || ||||||| | ||| || Sbjct 66110 TGCCAGCTATGCGCTGCTGACTATTTTGCTCGCGAAATGCGCTGGGTTGGATTGTGGAGA 66051 Query 34750 GCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACAT 34794 ||| || ||||| | || || || ||| | ||| ||| ||||| Sbjct 66050 GCTCGTCCATACCCTTGGAGACGCCCATGTGTACACGAATCACAT 66006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258516926960