Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 129 1e-24 >seq2 Length=132159 Score = 129 bits (142), Expect = 1e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || ||| |||||| || | ||||| || | || || Sbjct 77978 ACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGT 77919 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || |||||||| || ||||| || ||||| || ||||| || || || || Sbjct 77918 GCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCC 77859 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||| | ||||||| || | ||| ||||| || | |||||| || | Sbjct 77858 TTCCTTGTCTTGAA-CTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCAA 77800 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || ||||||||||| | ||| | ||||| Sbjct 77799 GGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||| |||||| || | ||||| || | || || | |||||| Sbjct 78196 AGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCC 78137 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || ||||| || ||||| || || || |||||||||||| Sbjct 78136 TCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 78077 Query 225622 TGGATCTTTTG-CTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 | || |||||| ||| | ||| ||||| || | |||||| || | ||||| || Sbjct 78076 T-GAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGT 78018 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| |||||| | ||| | ||||| Sbjct 78017 CTTGCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520611440942