Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq237 118 9e-22 >seq237 Length=72600 Score = 118 bits (130), Expect = 9e-22 Identities = 365/567 (64%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727 ||| || || || ||||| ||||| ||||| | |||||| || | ||| | | | Sbjct 66017 GTACACATGGGCGTCTCCAAGGGTATGGACGAGCTCTCCACAATCCAACCCAGCGCATTT 66076 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 || | || || || || | |||||||| ||||| || || || ||||| ||||| Sbjct 66077 CGCGAGCAAAATAGTCAGCAGCGCATAGCTGGCAATGTTGAACGGGACGCCGAGACCCAT 66136 Query 29788 GTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 29847 || | || |||||||||||| || ||||| ||| || |||||| ||||| | Sbjct 66137 ATCGGCACTCCGCTGGTAGAGCTGACAACTGAGCTTCCCGCCGGCCACGTAGAACTGCGA 66196 Query 29848 CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACAC 29907 || | | ||||| || || || ||||| | | | ||||||||| ||||||| Sbjct 66197 CAGGACGTGGCATGGTGGCAGCGCCATCTCGGGGATGGCCACGGGGTTCCACGCACACAA 66256 Query 29908 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 29967 || || |||| ||| ||||||||| |||| ||| ||| || | ||||| || Sbjct 66257 GAGCATTCGCCGGTCGCTTGGGTTGTTTCTGAGTGCGTCGACGATTTTCCGGAGCTGGTC 66316 Query 29968 CACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCA 30027 || ||| | || | ||| || |||| |||| ||| Sbjct 66317 GACGCCCTTTCCAGTGTAATCATCGTCGCAGTTGGTGTAGCTTGCGCCGAAGTGCCGCCA 66376 Query 30028 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AAGCCCCTCT-T 30084 ||||| || ||||| ||||| ||||||||| || | | ||| ||||| | Sbjct 66377 TTGGAAGCCATACACTGGTCCGAGGTCTCCC---TCACGTCGATCGGTGAGCCCAAGTGA 66433 Query 30085 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30144 ||| | | ||||| ||||| || ||||||| || || |||| || | | Sbjct 66434 GTCGAGGTATTCTCTTGAACCATTTCCGTCCCATATGCGAACGTCCTTATCACGCAAATG 66493 Query 30145 TTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30203 |||| || || | | | ||| | |||||| | ||||| || |||||| | |||| | Sbjct 66494 GTTGGCGTCGGT-GTCTCCCTGAATGAACCAGAAAAGCTCTTCGACGACGCCTCTCCAGA 66552 Query 30204 AGACCCTCTTGGTCGTGAGGAGGGGAA 30230 |||| | ||||||||| || ||||||| Sbjct 66553 AGACACGCTTGGTCGTCAGCAGGGGAA 66579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159769570998