Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq531 210 2e-49 seq171 210 2e-49 >seq531 Length=50098 Score = 210 bits (232), Expect = 2e-49 Identities = 573/873 (66%), Gaps = 11/873 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || ||||| || || || || | | ||||| |||||||||| |||||| Sbjct 48013 ACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGAGAAATCATTTCCATAAAGTCAAAC 47954 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | | ||||| | || ||| || || || | || || || || Sbjct 47953 GGGTTTTTGACTTTGTACCGCTTCTCATACCCGAGTGCGGTGATCAGACGATCGGCGCAG 47894 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || |||||| |||| || || ||| || || || | || ||| || ||||| Sbjct 47893 AACTCAATGTACTGGTTCATAAGATCTGCGTTCATCCCGATGAGTCGCACGGGAAGCGCA 47834 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | |||| ||||||||| || || | ||||| || ||| || | || | || Sbjct 47833 TCGGTCACAAACTCTTGCTCGATTTTGACGGCCTCGTGGATGATTGAATGTACTCGGTCC 47774 Query 4512 TTAGATGGTTTATTTACTAAGTAT---CCAAACAATAAACACGCAAAATCACAATGCAAA 4568 | || | || || |||| | | | || | ||| || || ||||| ||||| Sbjct 47773 TGTGACAGCTTGTTCTTCAAGTGTGAGCTGTATAAGAGACAAGCGAAGTCACAGTGCAAC 47714 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 || || || | | ||| || |||||| || ||||| || |||||||| |||| ||| Sbjct 47713 CCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTC 47654 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| || || || || ||| ||||| || || || || || || ||| Sbjct 47653 TTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAAC 47594 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 | || | || |||||||| ||| | |||||||||| | |||||| | | Sbjct 47593 CCGACAAGTCTTTCGGCGAACGAGTCTGCTGAAT---TAATCCATTTAATTGCCCATTGA 47537 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT-TTACTTTTTTCAAA 4807 || || | || ||| |||||||| || | |||||||| || | || | || | Sbjct 47536 GCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAAGAGCCTTGCCTTATCTGCT 47477 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||||| |||| ||||| || || | | |||||| || || || |||||||| || Sbjct 47476 TGGTTCTTGA-TATACGTGTCGATCAGGATGGAATACATCTCCGAGTGAATATTTTCAAT 47418 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 || || || || || |||||||| | | |||| | | |||| ||||| || | Sbjct 47417 CGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTGAATGTCGTTCATGAAGCG 47358 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 | | | | || || ||||| || ||| ||||| ||||| |||| ||| || Sbjct 47357 TGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGAAAAATGCCAGAACGTGCTT 47298 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || |||| | ||||| ||||| || || ||| | | ||||| | | Sbjct 47297 GATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCATTCTTTAACATCTTGGGAAAG 47238 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 || ||||||||||| ||||||||||| || || |||| |||||| | ||||||||| Sbjct 47237 GTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCTTTGTATTTCTTCCAAATATC 47178 Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 ||||||| || |||| | ||| ||||||| Sbjct 47177 GGGATACTCGATTGGAAACAGAACATATCTGTT 47145 >seq171 Length=86538 Score = 210 bits (232), Expect = 2e-49 Identities = 573/873 (66%), Gaps = 11/873 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || ||||| || || || || | | ||||| |||||||||| |||||| Sbjct 5027 ACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGAGAAATCATTTCCATAAAGTCAAAC 4968 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | | ||||| | || ||| || || || | || || || || Sbjct 4967 GGGTTTTTGACTTTGTACCGCTTCTCATACCCGAGTGCGGTGATCAGACGATCGGCGCAG 4908 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || |||||| |||| || || ||| || || || | || ||| || ||||| Sbjct 4907 AACTCAATGTACTGGTTCATAAGATCTGCGTTCATCCCGATGAGTCGCACGGGAAGCGCA 4848 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | |||| ||||||||| || || | ||||| || ||| || | || | || Sbjct 4847 TCGGTCACAAACTCTTGCTCGATTTTGACGGCCTCGTGGATGATTGAATGTACTCGGTCC 4788 Query 4512 TTAGATGGTTTATTTACTAAGTAT---CCAAACAATAAACACGCAAAATCACAATGCAAA 4568 | || | || || |||| | | | || | ||| || || ||||| ||||| Sbjct 4787 TGTGACAGCTTGTTCTTCAAGTGTGAGCTGTATAAGAGACAAGCGAAGTCACAGTGCAAC 4728 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 || || || | | ||| || |||||| || ||||| || |||||||| |||| ||| Sbjct 4727 CCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTC 4668 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| || || || || ||| ||||| || || || || || || ||| Sbjct 4667 TTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAAC 4608 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 | || | || |||||||| ||| | |||||||||| | |||||| | | Sbjct 4607 CCGACAAGTCTTTCGGCGAACGAGTCTGCTGAAT---TAATCCATTTAATTGCCCACTGA 4551 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT-TTACTTTTTTCAAA 4807 || || | || ||| |||||||| || | |||||||| || | || | || | Sbjct 4550 GCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAAGAGCCTTGCCTTATCTGCT 4491 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||||| |||| ||||| || || | | |||||| || || || |||||||| || Sbjct 4490 TGGTTCTTGA-TATACGTGTCGATCAGGATGGAATACATCTCCGAGTGAATATTTTCAAT 4432 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 || || || || || |||||||| | | |||| | | |||| ||||| || | Sbjct 4431 CGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTGAATGTCGTTCATGAAGCG 4372 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 | | | | || || ||||| || ||| ||||| ||||| |||| ||| || Sbjct 4371 TGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGAAAAATGCCAGAACGTGCTT 4312 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || |||| | ||||| ||||| || || ||| | | ||||| | | Sbjct 4311 GATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCATTCTTTAACATCTTGGGAAAG 4252 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 || ||||||||||| ||||||||||| || || |||| |||||| | ||||||||| Sbjct 4251 GTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCTTTGTATTTCTTCCAAATATC 4192 Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 ||||||| || |||| | ||| ||||||| Sbjct 4191 GGGATACTCGATTGGAAACAGAACATATCTGTT 4159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045993165769