Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq243 188 1e-42 seq531 172 8e-38 seq171 172 8e-38 seq512 93.3 6e-14 >seq243 Length=69200 Score = 188 bits (208), Expect = 1e-42 Identities = 567/864 (66%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 77682 ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTA 77741 || || || ||||| || || || ||||| | || | | ||||| | || || || Sbjct 22412 ATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTG 22353 Query 77742 CATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAG 77801 || || || ||||| ||||| ||||||| ||| | || ||| ||||| ||| |||| | Sbjct 22352 CACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCG 22293 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT---- 77857 ||||||||||| || |||| || |||||||| ||||| || ||||| ||||| Sbjct 22292 TCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGAT----GATTTGGAA 22237 Query 77858 CCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCT---CTTTCATATTGAGT 77914 ||||| |||| || | | | ||| || ||| || | ||||||||| Sbjct 22236 CCAGAG--CTCTTGCGCCG-TGACTGTTTTCGTTCCCCTGCCTTCACGTTCATATTGCTC 22180 Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG-GCATTCATTTGGGC 77973 |||| |||||| || ||||| | ||| | | || || ||| | ||| ||| Sbjct 22179 GTATAATTTTTCAAACTCTTCTCCATAGCAGTCAGCGAGGCCTGGAGCAAT-ATTAGGGT 22121 Query 77974 ACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATA 78033 | | || ||||| || || | || || |||||||| | ||| || ||||| | Sbjct 22120 CGAAAAGTGTCCAGTTCCCTGATTTTTGCACACGCTTCATAAACAAATCTGGAATCCAGA 22061 Query 78034 GAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGA 78093 | || ||| ||||| || | | |||||| || || || || || || || Sbjct 22060 GTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCGGTGTTTCGCTTGAGCGTGA 22001 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153 |||| || | |||||| | |||||| ||||||| ||| ||||| | | || || || Sbjct 22000 GAAATTCGAAAATATCTGCATGCCAGGGTTCTACATAGATTGCAAATGCACCTTTTCTTT 21941 Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 | ||| || || || | ||||| || || | ||| |||| | | |||||||| || Sbjct 21940 TGCCACCACCTTGGTCAACATATCGTGCCGTATCATTGAAAACACGAAGCATTGGAACAA 21881 Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273 || || |||||||| ||||||| || |||||||||| |||||| || | | Sbjct 21880 GCCCATTGCTCGTTCCATTGGTTCCAGCGATGTAACTTCCACATGCGCGGATGTCGTGCA 21821 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCA-ACGTTT-CAATGTATC 78331 | || || |||||||| ||| || | | || |||||| | ||| || ||| || Sbjct 21820 CGTGTAGGCCGATTCCTCCGGCCGATTT-GCTGATA-AGCGCACATGTTCGCAGTGTGTC 21763 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391 | | || || |||| ||| ||| | | || | ||||||||| ||| ||| | Sbjct 21762 GAATATTCCTGGTATAGAGTCTTCCTTGGTCGCAATTAAGAAACAGCTACTCATCTGAGG 21703 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAG 78451 | ||| ||||||||||| | || || | || |||||||||||| ||| || || Sbjct 21702 TTTCGGAGTACCTGCATTAAACAGCGTTGGTGTCGCGTGCGTAAACCATCCTTCGGAGAG 21643 Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACG 78511 | ||||| |||| | ||| ||| | || | || ||||| | ||| || || Sbjct 21642 CAATTTGTAGCTTTCTTTCACTGCTTCAAAATCAGGTGCGTGGATTCCGATCGCAACCCG 21583 Query 78512 CATCAACATATGCTGAGGTCTTTC 78535 || | ||| | |||||||| || Sbjct 21582 CAAAAGCATGTATTGAGGTCTCTC 21559 >seq531 Length=50098 Score = 172 bits (190), Expect = 8e-38 Identities = 413/618 (67%), Gaps = 9/618 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || ||||| || | || ||||| | ||| | |||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||||| ||| || || |||||||| || ||||| |||| |||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || || || || || || |||||| || || | | || | | || Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTAAT 47556 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| |||||| | |||||||| || ||||| || || || || ||||| || || Sbjct 47555 CCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 47496 Query 48380 GAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||| || || ||| | |||| | || || || || | | |||||| Sbjct 47495 GAGCCTTGCCTTATCTGCTTGGT-TCTTGATA-TACGTGTCGATCAGGATGGAATACATC 47438 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||||||||||||||| || || || || || ||||| || | |||| | |||| Sbjct 47437 TCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATC 47378 Query 48498 TGTACCTCCGTACAA-AATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || | || || || || ||| | || | ||||||| |||||||||||| || || Sbjct 47377 TGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGC 47319 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCA 48613 |||||||| | || || || || || | |||| | | || || | ||| Sbjct 47318 GAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCA 47259 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || | ||||| || | |||||||||||| |||||||||| || |||||||||| Sbjct 47258 TTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTC 47199 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||| || | ||||| ||||| || | |||||| || | |||| |||| || || || Sbjct 47198 TTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTT 47139 Query 48734 TTTTGCAAGGATAGGTTC 48751 || | ||| || || || Sbjct 47138 TTCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 172 bits (190), Expect = 8e-38 Identities = 413/618 (67%), Gaps = 9/618 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || ||||| || | || ||||| | ||| | |||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||||| ||| || || |||||||| || ||||| |||| |||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || || || || || || |||||| || || | | || | | || Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTAAT 4570 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| |||||| | |||||||| || ||||| || || || || ||||| || || Sbjct 4569 CCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 4510 Query 48380 GAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||| || || ||| | |||| | || || || || | | |||||| Sbjct 4509 GAGCCTTGCCTTATCTGCTTGGT-TCTTGATA-TACGTGTCGATCAGGATGGAATACATC 4452 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||||||||||||||| || || || || || ||||| || | |||| | |||| Sbjct 4451 TCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATC 4392 Query 48498 TGTACCTCCGTACAA-AATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || | || || || || ||| | || | ||||||| |||||||||||| || || Sbjct 4391 TGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGC 4333 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCA 48613 |||||||| | || || || || || | |||| | | || || | ||| Sbjct 4332 GAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCA 4273 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || | ||||| || | |||||||||||| |||||||||| || |||||||||| Sbjct 4272 TTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTC 4213 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||| || | ||||| ||||| || | |||||| || | |||| |||| || || || Sbjct 4212 TTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTT 4153 Query 48734 TTTTGCAAGGATAGGTTC 48751 || | ||| || || || Sbjct 4152 TTCTTGAAGCATTGGCTC 4135 >seq512 Length=1106 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| || || | ||||| || | |||||||||||| ||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 || ||| || | ||||| ||||| || | |||||| || | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 48731 ATTTTTTGCAAGGATAGGTTC 48751 |||| | ||| || || || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662782431520