Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq531 206 4e-48 seq171 206 4e-48 seq243 179 5e-40 seq512 96.9 5e-15 >seq531 Length=50098 Score = 206 bits (228), Expect = 4e-48 Identities = 600/916 (66%), Gaps = 22/916 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || ||||| || || ||||| || || || || || || | | || || || Sbjct 48028 TTCTGATAGTCACCGACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGAGAAATCATT 47969 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 |||||||| |||||||| || | || || || || | | | || | | | | ||| Sbjct 47968 TCCATAAAGTCAAACGGGTTTTTGACTTTGTACCGCTTCTCATACCCGAGTGCGGTGATC 47909 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || ||| || || ||| ||||| | || ||||| || |||||| Sbjct 47908 AGACGATCGGCGCAGAACTCAATGTACTGGTTCATAAGATCTGCGTTCATCCCGATGAGT 47849 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || || || | ||||||||| || || |||| || || || || Sbjct 47848 CGCACGGGAAGCGCATCGGTCACAAACTCTTGCTCGATTTTGACGGCCTCGTGGATGATT 47789 Query 46579 GATGTTACTGTTTCCT----CA-CTTGGTGGATGCATCAAATGTT---TAAACATTAAAC 46630 || |||| |||| || |||| | | |||| ||| | | | | || Sbjct 47788 GAATGTACTCGGTCCTGTGACAGCTTGTT-----CTTCAAGTGTGAGCTGTATAAGAGAC 47734 Query 46631 ATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCC 46690 | || || ||||| || | || ||||| | ||| | |||||| || || | | Sbjct 47733 AAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAAC 47674 Query 46691 CAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATA 46750 | ||||||| ||| ||||| |||||||| || || || |||| |||| ||||| | Sbjct 47673 CTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGA 47614 Query 46751 TGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCC 46810 | || || ||||| ||||| |||||||||| || || | | | | || ||||| Sbjct 47613 TTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTAATCC 47554 Query 46811 ACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 | ||| | ||||| | |||||| | || ||||| || || || || ||||| || || Sbjct 47553 A--TTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 47496 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 ||| || || | | || | ||| || || || | | |||||| || Sbjct 47495 GAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATCTC 47436 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 || ||||| |||||||| || || || || || ||||| || | |||||| ||||| Sbjct 47435 CGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTG 47376 Query 46989 TACCTCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | || || || || ||| | | | ||||||| |||||||||||| || || | Sbjct 47375 AATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGA 47317 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGT 47104 ||||||||| || || || || || | || ||| | || || | ||| | Sbjct 47316 AAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCATT 47257 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | || | ||||| || | |||||||||||| ||||||| || || |||||||||| || Sbjct 47256 CTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCTT 47197 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 | || | ||||| ||||| |||| | ||| ||||| | |||| |||| || || |||| Sbjct 47196 TGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTTTT 47137 Query 47225 TTGCAAGTATAGGTTC 47240 | ||| || || || Sbjct 47136 CTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 206 bits (228), Expect = 4e-48 Identities = 600/916 (66%), Gaps = 22/916 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || ||||| || || ||||| || || || || || || | | || || || Sbjct 5042 TTCTGATAGTCACCGACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGAGAAATCATT 4983 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 |||||||| |||||||| || | || || || || | | | || | | | | ||| Sbjct 4982 TCCATAAAGTCAAACGGGTTTTTGACTTTGTACCGCTTCTCATACCCGAGTGCGGTGATC 4923 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || ||| || || ||| ||||| | || ||||| || |||||| Sbjct 4922 AGACGATCGGCGCAGAACTCAATGTACTGGTTCATAAGATCTGCGTTCATCCCGATGAGT 4863 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || || || | ||||||||| || || |||| || || || || Sbjct 4862 CGCACGGGAAGCGCATCGGTCACAAACTCTTGCTCGATTTTGACGGCCTCGTGGATGATT 4803 Query 46579 GATGTTACTGTTTCCT----CA-CTTGGTGGATGCATCAAATGTT---TAAACATTAAAC 46630 || |||| |||| || |||| | | |||| ||| | | | | || Sbjct 4802 GAATGTACTCGGTCCTGTGACAGCTTGTT-----CTTCAAGTGTGAGCTGTATAAGAGAC 4748 Query 46631 ATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCC 46690 | || || ||||| || | || ||||| | ||| | |||||| || || | | Sbjct 4747 AAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAAC 4688 Query 46691 CAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATA 46750 | ||||||| ||| ||||| |||||||| || || || |||| |||| ||||| | Sbjct 4687 CTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGA 4628 Query 46751 TGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCC 46810 | || || ||||| ||||| |||||||||| || || | | | | || ||||| Sbjct 4627 TTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTAATCC 4568 Query 46811 ACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 | ||| | ||||| | |||||| | || ||||| || || || || ||||| || || Sbjct 4567 A--TTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 4510 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 ||| || || | | || | ||| || || || | | |||||| || Sbjct 4509 GAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATCTC 4450 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 || ||||| |||||||| || || || || || ||||| || | |||||| ||||| Sbjct 4449 CGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTG 4390 Query 46989 TACCTCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | || || || || ||| | | | ||||||| |||||||||||| || || | Sbjct 4389 AATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGA 4331 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGT 47104 ||||||||| || || || || || | || ||| | || || | ||| | Sbjct 4330 AAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCATT 4271 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | || | ||||| || | |||||||||||| ||||||| || || |||||||||| || Sbjct 4270 CTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCTT 4211 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 | || | ||||| ||||| |||| | ||| ||||| | |||| |||| || || |||| Sbjct 4210 TGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTTTT 4151 Query 47225 TTGCAAGTATAGGTTC 47240 | ||| || || || Sbjct 4150 CTTGAAGCATTGGCTC 4135 >seq243 Length=69200 Score = 179 bits (198), Expect = 5e-40 Identities = 568/875 (65%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 |||||||| ||| | || || || ||||| || ||||| ||||| | || | | Sbjct 22430 ACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTA 22371 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 |||| | || || ||||| || || ||||||||||| || || | ||| | || ||| Sbjct 22370 TATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTG 22311 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 ||||| ||||||| |||||||||||| | |||| || || ||||| ||||| || Sbjct 22310 GACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGAC 22251 Query 76439 TCGATAATAGATTT----CCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTC-- 76492 ||||| ||||| ||||| || || | | | | || || | || | Sbjct 22250 TCGAT----GATTTGGAACCAGAGCTCTTGCGCCGTGACTGTT--TTCGTTCCCCTGCCT 22197 Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 || | ||||||||| ||||| |||||| || ||||| | ||| | | || Sbjct 22196 TCACGTTCATATTGCTCGTATAATTTTTCAAACTCTTCTCCATAGCAGTCAGCGAGGCCT 22137 Query 76553 GGA-CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| || | ||| || | | || ||| | || || | || || |||||||| Sbjct 22136 GGAGCAAT-ATTAGGGTCGAAAAGTGTCCAGTTCCCTGATTTTTGCACACGCTTCATAAA 22078 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 | ||| || ||||| || || ||| ||||| || | | |||||| || || || Sbjct 22077 CAAATCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCGGT 22018 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || || || || || | |||||| | |||||| ||||||| ||| || || Sbjct 22017 GTTTCGCTTGAGCGTGAGAAATTCGAAAATATCTGCATGCCAGGGTTCTACATAGATTGC 21958 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | |||| || ||| ||| || || || | ||||| || || | ||| |||| Sbjct 21957 AAATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGTATCATTGAAAAC 21898 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 | | |||||||| || || || || ||||| ||||||| || ||||||||||| Sbjct 21897 ACGAAGCATTGGAACAAGCCCATTGCTCGTTCCATTGGTTCCAGCGATGTAACTTCCACA 21838 Query 76852 TGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 ||| || || | | |||||| |||||||| ||| ||| ||| || ||||| Sbjct 21837 TGCGCGGATGTCGTGCACGTGTAGGCCGATTCCTCCGGCCGATTTGCTGATAAGCGCACA 21778 Query 76912 GCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 | || |||||| | || || |||| || ||| | | || | ||||| Sbjct 21777 TGTTCGCAGTGTGTCGAATATTCCTGGTATAGAGTCTTCCTTGGTCGCAATTAAGAAACA 21718 Query 76972 GCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 |||| ||| ||| | | ||| ||||||||||||| || || | || || || || Sbjct 21717 GCTACTCATCTGAGGTTTCGGAGTACCTGCATTAAACAGCGTTGGTGTCGCGTGCGTAAA 21658 Query 77032 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 |||| ||| || || | ||||| |||| | |||||||| | ||| | || || Sbjct 21657 CCATCCTTCGGAGAGCAATTTGTAGCTTTCTTTCACTGCTTCAAAATCAGGTGCGTGGAT 21598 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 ||| | || || |||| | ||| | ||||||| Sbjct 21597 TCCGATCGCAACCCGCAAAAGCATGTATTGAGGTC 21563 >seq512 Length=1106 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || || | ||||| || | |||||||||||| ||||||| ||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 || ||| || | ||||| ||||| |||| | ||| ||||| | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 47220 ATTTTTTGCAAGTATAGGTTC 47240 |||| | ||| || || || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928224205760