Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 100 7e-16 >seq2 Length=132159 Score = 100 bits (110), Expect = 7e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || |||||||| || | | || | |||||| Sbjct 78196 AGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCC 78137 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || || | ||||||||| | | |||||||||||| | Sbjct 78136 TCGAGCTGCTTT--CCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT 78079 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC-TGAACTCTCTACTTCAAGAGTAATA 152069 |||||| |||| |||| | || | | | || | || || || || || || ||| Sbjct 78078 CTTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCT-TCCACCTCGAGTGTGATA 78020 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || ||||||| |||||| Sbjct 78019 GTCTTGCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || |||||||| || | | || | |||||| Sbjct 77968 AGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCC 77909 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || || | ||||||||| | | |||||||||||| | Sbjct 77908 TCGAGCTGCTTT--CCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT 77851 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC-TGAACTCTCTACTTCAAGAGTAATA 152069 |||||| |||| |||| | || | | | || | || || || ||||| || || Sbjct 77850 CTTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCT-TCCACCTCAAGGGTGATG 77792 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||| || ||||||| |||||| Sbjct 77791 GTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153810555153003