Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq531 122 9e-23 seq171 122 9e-23 >seq531 Length=50098 Score = 122 bits (134), Expect = 9e-23 Identities = 344/526 (65%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| || || ||||| || | || ||||| | ||| | || ||| || ||||| Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 ||||||||||||||||| || || | ||| || |||||| || ||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 || ||||| ||||| || || | ||||| | | | || | | ||| | Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA-- 47558 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||||| ||| ||| | ||||||| | |||||| ||| || || || || || Sbjct 47557 -ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 47499 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 ||||| | || ||| | | | | ||||| || || || || | |||||| Sbjct 47498 GAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACAT 47439 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 || || |||||||||||||| || || || || |||||||| || | | |||||| | Sbjct 47438 CTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGAT 47379 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 |||| || || | || | | || | ||| || || || |||||| || || Sbjct 47378 CTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGC 47319 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA----TTTTTTCC 23983 || || || ||||| | || || || || | || || || | ||| | || || Sbjct 47318 GAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCCC 47260 Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | || |||| ||||| || | || ||||| |||||||||||||| Sbjct 47259 ATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAA 47214 >seq171 Length=86538 Score = 122 bits (134), Expect = 9e-23 Identities = 344/526 (65%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| || || ||||| || | || ||||| | ||| | || ||| || ||||| Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 ||||||||||||||||| || || | ||| || |||||| || ||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 || ||||| ||||| || || | ||||| | | | || | | ||| | Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA-- 4572 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||||| ||| ||| | ||||||| | |||||| ||| || || || || || Sbjct 4571 -ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 4513 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 ||||| | || ||| | | | | ||||| || || || || | |||||| Sbjct 4512 GAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACAT 4453 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 || || |||||||||||||| || || || || |||||||| || | | |||||| | Sbjct 4452 CTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGAT 4393 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 |||| || || | || | | || | ||| || || || |||||| || || Sbjct 4392 CTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGC 4333 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA----TTTTTTCC 23983 || || || ||||| | || || || || | || || || | ||| | || || Sbjct 4332 GAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCCC 4274 Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | || |||| ||||| || | || ||||| |||||||||||||| Sbjct 4273 ATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAA 4228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521483482610200