Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 >seq2 Length=132159 Score = 147 bits (162), Expect = 5e-30 Identities = 161/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 || || ||||| |||||||| || || || || ||||| |||||||||| |||| | || Sbjct 77988 CAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGG-AAGCAAACGA 78046 Query 177983 CACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||| || ||| |||| |||||| |||| ||||| ||||||||||| || ||||||| Sbjct 78047 TACCATTGAAAACATCAAGGCAAAAG-TTCAAGACAAGGAAGGAATCCCACCAGACCAGC 78105 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| || ||||||||||| |||||||| ||||| | || || | || || ||| Sbjct 78106 AGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAACA 78165 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 | || |||||| || || || || ||| Sbjct 78166 TTCAGAAAGAAAGCACCCTTCACCTCGTT 78194 Score = 143 bits (158), Expect = 6e-29 Identities = 162/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 || || ||||| |||||| | || || || || |||||||| ||||||||| || | || Sbjct 77760 CAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAA-GCAAACGA 77818 Query 177983 CACCATCGAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||| || ||| |||| |||||| |||| ||||| ||||||||||| || ||||||| Sbjct 77819 TACCATTGAAAACATCAAGGCAAAAG-TTCAAGACAAGGAAGGAATCCCACCAGACCAGC 77877 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| || ||||||||||| |||||||| ||||| | || || | || || ||| Sbjct 77878 AGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAACA 77937 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | || |||||| || || || || ||| || Sbjct 77938 TTCAGAAAGAAAGCACCCTTCACCTCGTTCTG 77969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720511995442