Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq44 116 3e-21 seq88 113 4e-20 >seq44 Length=1445935 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| || |||||||| || ||||| |||||||| || || || | ||| Sbjct 1049993 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 1050052 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || | |||||||||| || | ||| |||||||| Sbjct 1050053 TCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1050112 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | || |||| || | | || ||| Sbjct 1050113 TGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTC 1050172 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177 ||||| || | ||| || || || || ||||||| Sbjct 1050173 TTGCCCGTCAGCGTCTTCACGAAGATCTGCATTT 1050206 >seq88 Length=784127 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| || |||||||| || ||||| |||||||| || || || | ||| Sbjct 683013 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 682954 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || | |||||||||| || | ||| |||||||| Sbjct 682953 TCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 682894 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | || |||| || | | || ||| Sbjct 682893 TGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTC 682834 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| || || || || ||||| Sbjct 682833 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| |||||||| || || || | ||| Sbjct 682508 AGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 682449 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || | |||||||||| || | ||| |||||||| Sbjct 682448 TCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 682389 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | || |||| || | | || ||| Sbjct 682388 TGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTC 682329 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| || || || || ||||| Sbjct 682328 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258705956736