Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 387 1e-102 seq44 167 2e-36 seq88 165 8e-36 >seq11 Length=2034363 Score = 387 bits (428), Expect = 1e-102 Identities = 610/863 (71%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| |||||||||| | ||||| || || || | ||| Sbjct 1272574 GAGCCGCTGCAGCAGGAGAACCCGTACCGGTTCGTGCTGTTCCCGATTCAGTATCACGAC 1272633 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 1272634 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 1272693 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || |||| | || |||| | ||||||| ||||| || |||||||||||| Sbjct 1272694 GGCAGTGACATGGTGGATTGGGTGAAGCTGAACGATGGGGAGCGACACTTCATCAAGCAC 1272753 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||| ||||| ||||| | |||||||||||||| | |||||| || | |||| ||| Sbjct 1272754 GTGCTCGCCTTCTTCGCGGGAAGCGACGGCATCGTGATCGAGAACCTCGCACAGCGCTTC 1272813 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGC-TTCTACGGCTTTCAGATCGCCATGGA 116874 || ||| || | | ||||||| |||| ||||| || |||||| | ||||| Sbjct 1272814 ATGACCGACGTGAAGATACCGGAGGCGC-GTGCGTTCTATGGGTTTCAGCTGATGATGGA 1272872 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCGGA 116931 ||| | |||||||| ||| ||| | | ||||| || | || | || || Sbjct 1272873 GAATATCCACTCGGAGGCGTACTCGGTGATGCTGGACACATACATCATGGACACT---GA 1272929 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 ||| |||||||| || | | || ||| ||||||| || ||| || || ||||||| | Sbjct 1272930 GGAAAAGCTCCGCATGCTACATGCGATCCAGACGATTCCATGCATCCAAAAGAAGGCTGC 1272989 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||||||| |||| ||||| ||| || |||| | |||| ||||| ||||| || || Sbjct 1272990 GTGGGCGGTGCGGTGGAT---CGGGAGCGAGGTCAGCTTCCAGGAGCGTCTGGTCGCGTT 1273046 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 || || ||||||||| |||||||||| ||| ||| | ||| | || ||||| |||| Sbjct 1273047 TGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTG-CGCACTGTTCTGGCTTAAGA 1273105 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | |||||| | |||||||| || || |||||||||||||| ||||| | |||||||| | Sbjct 1273106 AGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCC 1273165 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAG---CATTTGGTGCAGCGACCGAGCGCGG 117227 |||| |||||||| || |||||| || | || | ||| | | | ||||| Sbjct 1273166 TGCACACGGACTTTGCGTGCCTGCTGTACACGCGCCACATTAAGCA-CAAGCTGCCGCGG 1273224 Query 117228 -CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 ||||||| ||||||| |||| || ||||| | ||||||||| ||| || ||| Sbjct 1273225 TCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCATCTGCGAC 1273284 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 || ||||| ||||| ||| | || | || | || |||| ||| ||||||||||| Sbjct 1273285 GCACTGCCAGTGCGGCTGATCGGGATGAACTCGGAGCTGATGGGGCAGTACATCGAGTTT 1273344 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || || ||| | ||||| | | ||| | | | |||||||||||| || | || || Sbjct 1273345 GTTGCGGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAAGCACTACAACTCGGCGAATCCA 1273404 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 1273405 TTCGACTTCATGGAGATGATCTC 1273427 >seq44 Length=1445935 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || ||||| || ||||| |||||||| || ||| | |||| || || |||| Sbjct 1050206 AAATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCA 1050147 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||||| | | |||| | |||| || || | ||||| ||||||||||| ||||| Sbjct 1050146 GCGACACGATCGATAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 1050088 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| |||||||| |||||||| || | ||||| ||| |||||| Sbjct 1050087 CAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 1050028 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | |||||||| || ||| ||||| | | |||||| Sbjct 1050027 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGC 1049977 >seq88 Length=784127 Score = 165 bits (182), Expect = 8e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||| | |||| || || |||| | Sbjct 682802 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 682861 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 682862 GACACGATCGATAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 682920 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| |||||||| || | ||||| ||| |||||||| Sbjct 682921 GCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 682980 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| | |||||||| || ||| ||||| | | ||||||| Sbjct 682981 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGCG 683030 Score = 159 bits (176), Expect = 4e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||| | |||| || || |||| | Sbjct 682297 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 682356 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 682357 GACACGATCGATAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 682415 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| |||||||| || | ||||| ||| |||||||| Sbjct 682416 GCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 682475 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| | ||||| || || ||| ||||| | | ||||||| Sbjct 682476 CATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCCGCGGCGGCG 682525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218581736960