Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq44 125 8e-24 seq88 122 1e-22 seq31 86.0 7e-12 seq6 86.0 7e-12 >seq44 Length=1445935 Score = 125 bits (138), Expect = 8e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| || |||||| || || ||||| || || || || || | Sbjct 1049990 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 1050049 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 1050050 TCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1050109 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | | | | ||||||||| | ||||| |||| || ||| Sbjct 1050110 TCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATC 1050169 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 || |||||||| |||||||| || ||||| ||||||| Sbjct 1050170 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTT 1050206 >seq88 Length=784127 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| || |||||| || || ||||| || || || || || | Sbjct 683016 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 682957 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 682956 TCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 682897 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | | | | ||||||||| | ||||| |||| || ||| Sbjct 682896 TCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATC 682837 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| || ||||| ||||| Sbjct 682836 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | || |||||| || || ||||| || || || || || | Sbjct 682511 CGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 682452 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 682451 TCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 682392 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | | | | ||||||||| | ||||| |||| || ||| Sbjct 682391 TCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATC 682332 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| || ||||| ||||| Sbjct 682331 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 >seq31 Length=14234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| |||| |||||||||||||||| ||||| ||| |||||||| Sbjct 11762 CGGCCGGGAATCGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTGACCGCTATACTA 11703 Query 60131 CCGAG 60135 ||||| Sbjct 11702 CCGAG 11698 >seq6 Length=376300 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| |||| |||||||||||||||| ||||| ||| |||||||| Sbjct 166373 CGGCCGGGAATCGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTGACCGCTATACTA 166432 Query 60131 CCGAG 60135 ||||| Sbjct 166433 CCGAG 166437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816913818880