Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq88 111 1e-19 seq44 111 1e-19 >seq88 Length=784127 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 683010 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCC 682951 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 682950 AGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 682891 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||||||||| | | ||||||||| Sbjct 682890 ATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTG 682831 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| ||||| Sbjct 682830 CCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 682505 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCC 682446 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 682445 AGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 682386 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||||||||| | | ||||||||| Sbjct 682385 ATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTG 682326 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| ||||| Sbjct 682325 CCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 >seq44 Length=1445935 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 1049996 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCC 1050055 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 1050056 AGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 1050115 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||||||||| | | ||||||||| Sbjct 1050116 ATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTG 1050175 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| ||||| Sbjct 1050176 CCCGTCAGCGTCTTCACGAAGATCTGCAT 1050204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074737762016