Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 230 2e-55 seq96 214 2e-50 seq88 95.1 1e-14 seq44 91.5 1e-13 >seq11 Length=2034363 Score = 230 bits (254), Expect = 2e-55 Identities = 329/459 (72%), Gaps = 11/459 (2%) Strand=Plus/Plus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTTGG 58037 ||||||| || || ||||| || || |||||||| ||| |||||| || | || ||| Sbjct 1273040 TCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTGCG-CACTGTTCTGG 1273098 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| |||||| |||||||||| || || || ||||||||| |||| ||||||||| Sbjct 1273099 CTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAACGAGCTGATCTCGCGCGAC 1273158 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC---TCACATTGTCAATAAACCG 58154 ||||| || || || || ||||||||||| ||||| | |||||| | || | | Sbjct 1273159 GAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACACGCGCCACATTAAGCACAAGCTG 1273218 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 ||||| ||| | |||| || ||||| || ||||| | ||||| | ||||| || Sbjct 1273219 CCGCGGTCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCATC 1273278 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||| || || || ||| || |||| |||||| || ||||| ||||||| Sbjct 1273279 TGCGACGCACTGCCAGTGCGGCTGATCGGGATGAACTCGGAGCTGATGGGGCAGTACATC 1273338 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG---AGAGCGTCATTACAACACG 58331 ||||||||||| ||| | | |||||| | |||| ||| || |||||| || Sbjct 1273339 GAGTTTGTTGCGGACCGCC---TGCTCGTTGCGCTTGGGGAGGAGAAGCACTACAACTCG 1273395 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaa 58391 ||||| || || || ||| | |||||||||| |||||||||| ||||| ||||| Sbjct 1273396 GCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAG 1273455 Query 58392 aaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || ||| |||| ||||| || || ||||||||| Sbjct 1273456 AAGAAGGTTGGCGAGTATCAGAAGGCTGGTGTGATGAGC 1273494 >seq96 Length=723174 Score = 214 bits (236), Expect = 2e-50 Identities = 575/871 (66%), Gaps = 20/871 (2%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 |||||| || || | ||||| || ||| ||| || |||||||||||| | |||||| Sbjct 450742 GGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTACTCAATAATTTC 450801 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || ||||||||| || || |||||||| | | | ||||| || | ||||| Sbjct 450802 TGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGACTTCCTGTTGCA 450861 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || ||| || || |||||| | || |||||||| | ||| | ||| | ||| | Sbjct 450862 CGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAGATAGTAAA 450921 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCC-----TCGTACTTT 23254 ||||| ||| || | | ||| || ||| ||||||| ||||| | Sbjct 450922 CCACAGCTCCTGCGCTGGGA----TCGTGCGCACCC-CCTTCTTTTGTGTTTCGTAGCTC 450976 Query 23255 TGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGG 23313 ||||| | ||||| || | || || || ||| || || |||| || || Sbjct 450977 ACATACAAGGATTCAAACTCCTCTCCATAGCAATCGCTAAGACCCGGGCACATGTGG-GG 451035 Query 23314 ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 | ||| || |||| || || | || || || |||| || ||||| |||||||| Sbjct 451036 ATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGTATCCA 451095 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 || ||||||| || || || || || || || || || || || |||| Sbjct 451096 AAGGCCGTAGAAGAGATCCCGCGCACGTTGATCATCCTTACCCGTATTACGCTTCAGCAT 451155 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 || ||| || || | ||| || ||||| ||||| || || || ||||| || ||| | Sbjct 451156 CAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACCCTTGCG 451215 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 |||| ||| |||||||| ||||| ||||| ||||||||| |||| | ||||| ||||| Sbjct 451216 CTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCATGGGCAC 451275 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 |||||||||||| | || | ||| || | | || | || | |||||| Sbjct 451276 GAGACCGTTGGAAGTCCCATTTGTGCCAGCAATATAGCTTCCAGAGGAACGGATGTTGTG 451335 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 |||||| | || || || ||| | || || |||| ||||| | ||||| ||||| Sbjct 451336 AACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAGGGTGTC 451395 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 |||||||||||| ||||| ||||| || | || | | || ||||| |||||| | Sbjct 451396 GTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTCATTTGGGG 451455 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 ||||| | || ||| || ||||| ||||||| || ||| |||| || ||||| Sbjct 451456 CCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCCTTGGACAT 451515 Query 23794 TAGATTGTACGTGTCGATGGCGGCAT----CAATGTCCTCTCCGTGTATACCGATGGCGA 23849 | | || || |||| || | | ||| |||| ||| || || || | |||| Sbjct 451516 CAATTCATAGGT-TCGA--GCCACTTTCTCCAAGTTCCT-TCCATGAATCCCAAGTGCGA 451571 Query 23850 CGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 | |||| ||||||| ||||| | ||| || Sbjct 451572 CACGCAGGATCATGTGCTGAGGGCGCTCCAC 451602 >seq88 Length=784127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || | | Sbjct 682297 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 682356 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 682357 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 682416 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| |||| || || | || || ||| Sbjct 682417 CAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 682476 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| ||||| ||||| || Sbjct 682477 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCT 682508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || | | Sbjct 682802 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 682861 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 682862 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 682921 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || ||||| ||| |||| || Sbjct 682922 CAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGA 682956 >seq44 Length=1445935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || | | Sbjct 1050204 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 1050145 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 1050144 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1050085 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || ||||| ||| |||| || Sbjct 1050084 CAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGA 1050050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765865080320