Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 >seq11 Length=2034363 Score = 100 bits (110), Expect = 3e-16 Identities = 297/449 (66%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 52618 GAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttC-GGGTAGTTTTGCGGC 52676 || ||||||||||||||||| || || || | || ||||| |||| ||||||| | Sbjct 1273030 GAGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTGCG-C 1273088 Query 52677 AATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGAT 52736 | | || | | || | ||| | |||||||| || || || ||||||||| |||| Sbjct 1273089 ACTGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAACGAGCTGAT 1273148 Query 52737 ATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGCG---CGT 52793 ||||||||||| || ||||||| || |||||||| || | | ||||| | | Sbjct 1273149 CTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGT---ACACGCGCCACAT 1273205 Query 52794 TAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGA 52853 ||| | || || | | || || || | | || || || ||||| || Sbjct 1273206 TAAGCACAAGCTGCCGCGGTCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGA 1273265 Query 52854 AAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGAT 52913 | ||||| | ||||| | || || || | || |||||| || |||| Sbjct 1273266 GCACGAGTTCATCTGCGACGCACTGCCAGTGCGGCTGATCGGGATGAACTCGGAGCTGAT 1273325 Query 52914 GTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGTCAGCCGAAAT 52972 | | ||||||||||||||||||||||| | ||| | | ||| ||| || || ||| Sbjct 1273326 GGGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGC-GCTTGGGGAGGAGAAGC 1273384 Query 52973 ACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAA 53032 |||| || || || || || || ||| | | || ||||| ||||||| || | Sbjct 1273385 ACTACAACTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCA 1273444 Query 53033 ACTTTTTCGAG-AGACGTGTGGGCGAGTA 53060 |||| |||||| ||| | || |||||||| Sbjct 1273445 ACTTCTTCGAGAAGAAG-GTTGGCGAGTA 1273472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063404723200