Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq96 100 4e-16 seq11 87.8 3e-12 >seq96 Length=723174 Score = 100 bits (110), Expect = 4e-16 Identities = 408/635 (64%), Gaps = 6/635 (1%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||| ||||| || || || ||||| || || | | | ||| || ||| Sbjct 450794 ATAATTTCTGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGACTTC 450853 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 |||| |||||||| ||||| || ||||| ||| ||| || |||||||| | |||| Sbjct 450854 CTGTTGCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAG 450913 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTAT 79845 || | ||| | | | || || | | |||||| | ||||||| Sbjct 450914 ATAGTAAACCACAGCTCCTGCGCTGGGATCGTGCGCACCCCCTTCTTTTGTGTTTCGTAG 450973 Query 79846 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT-CCAGGACATTCGTC 79904 ||| || ||| ||||| ||||| | |||| |||| || || || || Sbjct 450974 CTCACATACAAGGATTCAAACTCCTCTCCATAGCAATCG-CTAAGACCCGGGCACATGTG 451032 Query 79905 AGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAAT 79964 ||| ||| | || ||| ||| || || ||||| || ||||| |||||||| || || Sbjct 451033 GGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGTAT 451092 Query 79965 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 80023 |||||| || || || ||||| | | | || || || || || ||||| || | Sbjct 451093 CCAAAG-GCCGTAGAAGAGATCCCGCGCACGTTGATCATCCTTACCCGTATTACGCTTCA 451151 Query 80024 G-ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 80082 | ||| || ||| | | ||| |||| ||||| || |||| || | || | | ||| Sbjct 451152 GCATC-AGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACCC 451210 Query 80083 GGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 80142 || || || |||||||| | ||| | |||||||| || | || | || ||| Sbjct 451211 TTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCATG 451270 Query 80143 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 80202 || | | ||| ||||| || ||||| || || | |||||||||||| || ||| || Sbjct 451271 GGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATATAGCTTCCAGAGGAACGGATG 451330 Query 80203 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 80262 || || || || || || || || ||| ||| | ||||| || | Sbjct 451331 TTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAGG 451390 Query 80263 GTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 || || ||||||||||| |||||||| || |||| Sbjct 451391 GTGTCGTAGATGCCCTCAATGCTATCCTCCTTCAT 451425 >seq11 Length=2034363 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 |||||| |||||||| | || || |||||| || || || |||||||| | ||| Sbjct 1273170 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCGGGCATCACGCC 1273111 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAA-TGACCCAGAAAAGAAGATTCCTTCTACTG 50092 ||||| |||||||| || | | |||||| |||||| ||||||||||| || || || | Sbjct 1273110 GCGCTTCTTAAGCCAGAACAGTG-CGCAAAATGACCCTGAAAAGAAGATGCCCTCGACAG 1273052 Query 50093 CGGCAAAGGCAACAAGTCTCTC 50114 | ||||| || || || | ||| Sbjct 1273051 CTGCAAACGCGACCAGACGCTC 1273030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267938077440