Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11 125 1e-23 >seq11 Length=2034363 Score = 125 bits (138), Expect = 1e-23 Identities = 574/889 (65%), Gaps = 40/889 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || || |||||| ||||| ||| | |||||| || || || | | Sbjct 1272610 CTGTTCCCGATTCAGTATCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 1272669 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||||| || ||| |||| ||| || ||| || ||||||| || | ||| Sbjct 1272670 TGGACGGTGGAGGAGATCGACCTGGGCAGTGACATGGTGGATTGGGTGAAGC---TGAAC 1272726 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||||| | || || |||| | | |||||||| || || ||| || ||| Sbjct 1272727 GATGGGGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCGGGAAGCGACGGCATC 1272786 Query 125175 GTCAACGACAATCTGTTGACA-CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || | ||| || || ||| || ||| || ||| || || |||| | |||| Sbjct 1272787 GTGATCGAGAACCTCGC-ACAGCGCTTCATGACCGACGTGAAGATACCGGAGGCG-CGTG 1272844 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || || || | ||||| ||||| | |||||||| |||||| || Sbjct 1272845 CGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGGCGTACTCGGTGATGC 1272904 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA----CACATGCTCTTTAACGCAATCGAC 125348 | |||| ||||| || | | | ||| | |||||| | || ||| | Sbjct 1272905 TGGACACATACATCATGGACACTGAG-GAAAAGCTCCGCATGCTACAT---GCGATCCAG 1272960 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 ||| | || | || | || |||||| |||| | | |||||||||| ||| | Sbjct 1272961 ACGATTCCATGCATCCAAAAGAAGGCTGCGTGGGCGGTGCGGTGGATCGGGAGCGAG--G 1273018 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGG 125467 || | | | || | ||||| || || || || || ||||||||||||||||| ||| Sbjct 1273019 TCAGCTTCCAG-GAGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGG 1273077 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | |||||| || | || ||||| ||||||||||| | |||||||| || || ||| Sbjct 1273078 TCATTTTGC-GCACTGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAG 1273136 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT---T 125584 |||||| | || || || ||||||||||| ||| |||||||| || |||| Sbjct 1273137 CAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAC 1273196 Query 125585 TCGCAACTATCTGCGTCCCGAG-TGC--AGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 ||| || | | | | || ||| | || ||| || || |||| | Sbjct 1273197 GCGCCACATTAAG---CACAAGCTGCCGCGGTCGCGCG-TG--CTGGAGATCA------T 1273244 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 || ||||| ||| || || || ||||| | ||| | || || || | |||| Sbjct 1273245 CACGGATGCGGTGGACATCGAGCACGAGTTCATCTGCGACGCACTGCCAGTGCGGCTGAT 1273304 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GT 125760 || ||||||| |||| ||| | ||||||| |||||||| || || || || || || Sbjct 1273305 CGGGATGAACTCGGAGCTGATGGGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGT 1273364 Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 ||| | | ||| |||||| | |||||| || || |||||| | | Sbjct 1273365 TGCGCTTGGGGAGGAG-AAGCACTACAACTCGGCGAATCCATTCGACTTCATGGAGATGA 1273423 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || || |||| ||||||||||| |||||||||||||| ||||||| Sbjct 1273424 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGAAGGTTGGCGAGTA 1273472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058310728960