Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 196 5e-45 seq88 114 1e-20 seq44 113 4e-20 >seq11 Length=2034363 Score = 196 bits (216), Expect = 5e-45 Identities = 323/454 (71%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGG--CAGTTTTGCCG 46210 |||||| |||| || ||||| ||| |||||| |||| ||||| || || |||||| | Sbjct 1273030 GAGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCA-TTTTGC-G 1273087 Query 46211 CCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGA 46270 | | || | | || | ||| | |||||||| || || || ||||||||||||| Sbjct 1273088 CACTGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAACGAGCTGA 1273147 Query 46271 TATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCG--- 46327 | |||||||||||||||||||| |||||||||||||| || || || ||| ||| Sbjct 1273148 TCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTG--CTGTA-CACGCGCCACA 1273204 Query 46328 TGCACGACAAGCTTGCGCCCGACAC-CGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATT 46386 | | ||||||| ||| | | | ||||||| || ||| ||| ||||||| ||| Sbjct 1273205 TTAAGCACAAGCTGCCGCG-GTCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATC 1273263 Query 46387 GAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC-CTGCTGGGCATGAACGCACAGTC 46445 ||| | ||||| | | ||||||||| | ||| ||| | || |||||| | || Sbjct 1273264 GAGCACGAGTTCATCTGCGACGCACTGCCAG-TGCGGCTGATCGGGATGAACTCGGAGCT 1273322 Query 46446 AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAA 46505 ||| | | |||||||||||||| |||||||| |||||||| |||| || ||| Sbjct 1273323 GATGGGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAA 1273382 Query 46506 GCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAAC 46565 ||| | || || |||||||| || || ||| | | ||||| ||| ||||||| || Sbjct 1273383 GCACTACAACTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGAC 1273442 Query 46566 TAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 || || ||||| ||| || ||||||||| || Sbjct 1273443 CAACTTCTTCGAGAAGAAGGTTGGCGAGTATCAG 1273476 >seq88 Length=784127 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 131001 CCATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGT 131059 |||||| ||| ||||| | |||||||| | || | ||||||||||| || ||||||| Sbjct 682531 CCATGACGCCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGT 682472 Query 131060 AATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGT 131119 | || | ||||| ||||| ||||||||||| || |||| | ||||||||||| Sbjct 682471 AGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGT 682412 Query 131120 CCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGG 131179 |||| ||||| || || ||||| ||| ||| ||| | | || | || ||| ||| Sbjct 682411 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGG 682352 Query 131180 ACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | |||| | | || || || || || || || ||||| |||||||| Sbjct 682351 CCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | |||||||| | || | ||||||||||| || |||||||| || Sbjct 683029 GCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 682970 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| || |||| | ||||||||||||||| || Sbjct 682969 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGG 682910 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | || | || ||| ||| ||| | Sbjct 682909 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCAC 682850 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| | | || || || || || || || ||||| |||||||| Sbjct 682849 CTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 >seq44 Length=1445935 Score = 113 bits (124), Expect = 4e-20 Identities = 169/239 (71%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||| | |||||||| | || | ||||||||||| || |||||||| || Sbjct 1049976 AGCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1050035 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| ||||| ||||||||||| || |||| | ||||||||||||||| | Sbjct 1050036 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCG 1050095 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| ||| ||| | | || | || ||| ||| ||| | Sbjct 1050096 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCA 1050155 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC-TTATTT 131243 |||| | | || || || || || || || ||||| |||||||| | |||||| Sbjct 1050156 CCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTCTTTATTT 1050214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012233584640