Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq44 118 9e-22 seq88 113 4e-20 >seq44 Length=1445935 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16705 TTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTC 16764 ||| || || || || | ||| |||| |||||||| |||||||| || ||||||||||| Sbjct 1049974 TTAGCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 1050033 Query 16765 GGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 || | || | | ||||||| || ||||||||| | || || ||||| |||||| Sbjct 1050034 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGG 1050093 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | |||||| ||||| || | | |||||| | | | ||||||| || ||| Sbjct 1050094 CGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTC 1050153 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 | || | | ||| || || || |||||||| || || || |||||||||| Sbjct 1050154 CACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTT 1050206 >seq88 Length=784127 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||||| |||||||| || ||||||||||| || Sbjct 683028 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682969 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||||||| | || || ||||| |||||| || Sbjct 682968 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682909 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | | |||||| | | | ||||||| || |||| Sbjct 682908 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682849 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | | ||| || || || |||||||| || || || |||||||| Sbjct 682848 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || ||||| |||||||| || ||||||||||| || Sbjct 682523 CCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682464 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||||||| | || || ||||| |||||| || Sbjct 682463 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682404 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | | |||||| | | | ||||||| || |||| Sbjct 682403 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682344 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | | ||| || || || |||||||| || || || |||||||| Sbjct 682343 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087526047040