Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq33 86.0 8e-12 seq22 82.4 9e-11 >seq33 Length=1536331 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 || || || |||| ||| ||||| || |||||||| ||| | | | | || ||| Sbjct 1075409 TCTTTTCCGCCCTGCAAACGCGTACCGAACTGACCATCCTGGAAGAGAAGGGGGACGTTG 1075468 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || |||||||||||||| | | || ||||||| |||| || |||||| || Sbjct 1075469 TTGCTGCCGACAAAGTCCTGCGCCATCGCAACGATGGTCT-GCACGAGCGACTGCTCCCC 1075527 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||||| |||||||| |||||| | |||||||| Sbjct 1075528 GTGGTGGTAGGCGGAGTGCTCGGAGACGTAGCCCGCGAGCTGCACGACCTTGAT 1075581 >seq22 Length=1603200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 15416 TACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAG 15475 || ||||| || || || || ||||| | ||||||||||||||||| || ||| | | Sbjct 602426 TATTATCAGCGGCTAAAGCATATGGTGACCGACAAGATGCACGCGCGCGCGACCGGGCCG 602367 Query 15476 GTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTT 15535 ||| |||| || ||||||| | || || ||| |||| ||||| ||| | Sbjct 602366 CGCTCGATGCTCACCCGACAGCCCACCGAGGGCCGCGCGCGCAGCGGCGGCCTGCGCGTC 602307 Query 15536 GGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGAGCGC 15595 || |||||||| || ||||| | | |||||| | |||| ||||| |||||||| Sbjct 602306 GGCGAGATGGAGCGCGATTGCATGGTTGGCTACGGCGTCGCCCACCTCCTCCACGAGCGC 602247 Query 15596 ATGTTTCTCA 15605 || | |||| Sbjct 602246 CTGCTCCTCA 602237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611391266329600