Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 2e-13 seq55 82.4 9e-11 >seq11 Length=2034363 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||||| | |||||||||||| || || | || ||||| || || |||| ||| |||| Sbjct 1273195 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 1273136 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA- 93199 |||| |||| || || | || || || ||||| ||||| || | || |||||| | Sbjct 1273135 TGAAGGTTAGCCCGGGCATCACGCCGCGCTTCTTAAGCCAGAACAGTG-CGCAAAATGAC 1273077 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || ||||| || || || || || |||||||| || || | ||| || Sbjct 1273076 CCTGAAAAGAAGATGCCCTCGACAGCTGCAAACGCGACCAGACGCTC 1273030 >seq55 Length=990583 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || ||| | |||||||||||| Sbjct 27096 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTTTCGAG-GCGTGGGTTCGA 27153 Query 126333 ACCCCAC 126339 ||||||| Sbjct 27154 ACCCCAC 27160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860131767040