Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq88 84.2 2e-11 seq44 82.4 6e-11 >seq88 Length=784127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| || || || || || | || || || ||| || | || || ||||| | Sbjct 682293 AAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGC 682352 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || ||| || | || | | || || || || ||||||||||| || || || || Sbjct 682353 CAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 682412 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| || ||||| ||||| ||| | ||||| |||||| || | || || Sbjct 682413 CCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 682472 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || || || || Sbjct 682473 CAACATCCAGAAGGAGTCGAC 682493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| || || || || || | || || || ||| || | || || ||||| | Sbjct 682798 AAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGC 682857 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || ||| || | || | | || || || || ||||||||||| || || || || Sbjct 682858 CAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 682917 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| || ||||| ||||| ||| | ||||| |||||| || | || || Sbjct 682918 CCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 682977 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || || || || Sbjct 682978 CAACATCCAGAAGGAGTCGAC 682998 >seq44 Length=1445935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/204 (69%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 22214 TAAAGA--TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||||| |||| || || || || || | || || || ||| || | || || ||||| Sbjct 1050211 TAAAGAAATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGA 1050152 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| ||| || | || | | || || || || ||||||||||| || || || Sbjct 1050151 GGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCC 1050092 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| || ||||| ||||| ||| | ||||| |||||| || | || Sbjct 1050091 GGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGA 1050032 Query 22392 TTACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || || || Sbjct 1050031 CTACAACATCCAGAAGGAGTCGAC 1050008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727508918240