Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11 170 4e-37 seq33 87.8 3e-12 >seq11 Length=2034363 Score = 170 bits (188), Expect = 4e-37 Identities = 560/851 (66%), Gaps = 52/851 (6%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| || || |||||||| ||||| ||| |||||||||||||| |||||||| Sbjct 1273492 TCATCACACCAGCCTTCTGATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCT 1273433 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || ||| | | | | ||||| | | Sbjct 1273432 GCAGCGAGATCATCTCCATGAAGTCGAATGGATTCGCCGAGTTGTAGTGCTTCTCCTCCC 1273373 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || || || | |||||| || || |||||||||||||| | |||||| ||||||| Sbjct 1273372 CAAGCGCAACGAGCAGGCGGTCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAGT 1273313 Query 10114 TCATGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||| || |||| || ||| || | |||||||| ||||| || | ||| || | ||| Sbjct 1273312 TCATCCCGATCA-GCCGCACTGGCAGTGCGTCGCAGATGAACTCGTGCTCGATGTCCACC 1273254 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG-TCAA--GGGACAGCTTGTTCT---CGAGCTTC 10226 || ||| |||| ||| | |||| | | | | |||||||| || | | | Sbjct 1273253 GCATCC---GTGATGATCTCCAGCACGCGCGACCGCGGCAGCTTGTGCTTAATGTGGCGC 1273197 Query 10227 GAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | ||||| || |||| | | ||| |||||||||||||| ||| | ||||||| Sbjct 1273196 GTGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 1273137 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || || |||||||| | || || || |||||||| | ||||| || ||| Sbjct 1273136 CTGAAGGTTAGCCCGGGCATCACGCCGCGCTTCTTAAGCCAGAACAGTGCGCAAAATGAC 1273077 Query 10347 CCGGAGAACAGAAGA--CCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGCGAAG 10400 || ||| |||||| ||||| || ||| || ||||| || ||||| |||| Sbjct 1273076 CC--TGAAAAGAAGATGCCCTCGACAGCTGCAAAC----GCGACCAGACGCTCCTGGAAG 1273023 Query 10401 GAGCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATC 10460 | |||| | | | | |||||||| ||||||||| | | || ||| Sbjct 1273022 CTGACCTCGCTCCCGATCCACCGCACCGCCCACGCAGCCTTCTTTTGGATGCATGGAATC 1272963 Query 10461 GTCTCGATAGC------CTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCA 10514 |||| ||| || | | |||||| | ||| || |||| || | Sbjct 1272962 GTCTGGATCGCATGTAGCATGCGGAGCTTTT---CCTCAGT---GTCCATGATGTATGTG 1272909 Query 10515 TCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAG 10574 || || | || ||||| ||| ||||| |||| | | ||| | | ||| Sbjct 1272908 TCCAGCATCACCGAGTACGCCTCCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAG 1272849 Query 10575 AACATACGTGCCGAGGGGTCC-GTGACTT--CCTCGG-CA--AAGTTGTTGTTC-AGGTT 10627 ||| ||| ||| ||| || ||| | |||| || ||| | ||| | ||||| Sbjct 1272848 AACGCACGCGCC------TCCGGTATCTTCACGTCGGTCATGAAG-CGCTGTGCGAGGTT 1272796 Query 10628 CTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCG 10687 ||| ||||| ||||| ||||| || || |||||| |||| | ||||||||||||||| || Sbjct 1272795 CTCGATCACGATGCCGTCGCTTCCCGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCG 1272736 Query 10688 CTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTC 10747 ||| |||||||||| ||||| ||| || |||| || | || | || |||||| Sbjct 1272735 CTCCCCATCGTTCAG--CTTCAC-CCAATCCACCATGTCACTGCCCAGGTCGATCTCCTC 1272679 Query 10748 CACGGTCCAGA 10758 ||| ||||||| Sbjct 1272678 CACCGTCCAGA 1272668 >seq33 Length=1536331 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 159703 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 159646 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 369034 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 369091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621294053120