Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 293 4e-74 >seq11 Length=2034363 Score = 293 bits (324), Expect = 4e-74 Identities = 593/865 (69%), Gaps = 29/865 (3%) Strand=Plus/Plus Query 42294 CAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATT 42353 || ||||||||| || ||||||| || | || || || |||||| | |||||||| Sbjct 1272628 CACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATC 1272687 Query 42354 GACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTT 42409 ||||||| || |||| || | |||| | ||| || || ||| | || Sbjct 1272688 GACCTGGGCAGTGACATGGTGGATTGGGTGAAGCTGAACGATGGGGAGCGACAC----TT 1272743 Query 42410 CCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGC 42469 | |||| || | || ||||||||||| | |||||||| || | |||||||| || Sbjct 1272744 CATCAAGCACGTGCTCGCCTTCTTCGCGGGAAGCGACGGCATCGTGATCGAGAACCTCGC 1272803 Query 42470 -CACCAGGTTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || | | ||||||| || ||| || ||| |||||||| ||| ||||| || || || Sbjct 1272804 ACAGC-GCTTCATGACCGACGTGAAGATACCG-GAGGCGCG-TGCGTTCTATGGGTTTCA 1272860 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 | | || ||||| | ||||| |||| |||| | |||| |||| |||||| | Sbjct 1272861 GCTGATGATGGAGAATATCCACTCGGAGGCGTACTCGGTGATGCTGGACACATACATCAT 1272920 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | | || | | || | | || || ||||||| || |||||| | || Sbjct 1272921 GGACACTGAGGAAAAGCTCCGCATGCTACATGCGATCCAGACGATTCCATGCATCCAAAA 1272980 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 |||||| | |||||| | ||||||| ||| ||| | | ||| ||| | || Sbjct 1272981 GAAGGCTGCGTGGGCGGTGCGGTGGATCGGGAG---CGAGGTCAGCTTCCAGGAGCGTCT 1273037 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 ||| || ||| | || ||||||||||||||||| || || | || | | | ||||| Sbjct 1273038 GGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTGCGCACTGTTCTG 1273097 Query 42767 GCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||| ||| || || || ||||||||| || |||||| ||||| || ||| | | Sbjct 1273098 GCTTAAGAAGCGCGGCGT-GATGCCCGGGCTAACCTTCAGCAACGAGCTGATCTCGCGCG 1273156 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 ||||||| ||||| | ||||||||| ||||| |||| | || ||||| | | |||||||| Sbjct 1273157 ACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACACGCGCCACATTAAGCACAAGC 1273216 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 || | ||| || | || ||||||||||| || ||||| |||||| | |||||| Sbjct 1273217 TGCCGCGGTCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCA 1273276 Query 42946 TC----ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || ||||| ||||| ||| ||| |||| |||||| || || ||| | || Sbjct 1273277 TCTGCGACGCA----CTGCCAGTGCGGCTGATCGGGATGAACTCGGAGCTGATGGGGCAG 1273332 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 |||||| ||| || || |||| || || || | |||| || | | |||||| Sbjct 1273333 TACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAAG-CACTACAA 1273391 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | || || || |||||||| ||||||| |||||| || |||||||||||||||| || Sbjct 1273392 CTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCAACTTCTT 1273451 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||| || | ||| || ||| Sbjct 1273452 CGAGAAGAAGGTTGGCGAGTATCAG 1273476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338066792960