Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq88 93.3 3e-14 seq44 87.8 1e-12 >seq88 Length=784127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| |||||||| ||||||||| |||||||| || || | || Sbjct 682514 AGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 682455 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||| ||||| ||||| |||||||| ||| ||| | || ||| Sbjct 682454 CCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 682395 Query 34030 TTGTCC 34035 |||||| Sbjct 682394 TTGTCC 682389 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || ||||| ||||||||| |||||||| || || | || Sbjct 683019 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 682960 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||| ||||| ||||| |||||||| ||| ||| | || ||| Sbjct 682959 CCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 682900 Query 34030 TTGTCC 34035 |||||| Sbjct 682899 TTGTCC 682894 >seq44 Length=1445935 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || ||||| ||||||||| |||||||| || || | || Sbjct 1049987 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 1050046 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||| ||||| ||||| |||||||| ||| ||| | || ||| Sbjct 1050047 CCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 1050106 Query 34030 TTGTCC 34035 |||||| Sbjct 1050107 TTGTCC 1050112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061935436992