Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq88 152 1e-31 seq44 150 4e-31 >seq88 Length=784127 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || |||| ||| || || ||||| || ||||| ||| Sbjct 682523 CCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682464 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || |||||||||||||| || ||| Sbjct 682463 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682404 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||| | || || Sbjct 682403 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682344 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||| || ||||| ||||| ||||| |||||||| Sbjct 682343 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | ||| || || ||||| || ||||| ||| Sbjct 683028 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682969 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || |||||||||||||| || ||| Sbjct 682968 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682909 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||| | || || Sbjct 682908 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682849 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||| || ||||| ||||| ||||| |||||||| Sbjct 682848 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 >seq44 Length=1445935 Score = 150 bits (166), Expect = 4e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | ||| || || ||||| || ||||| ||| Sbjct 1049978 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1050037 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || |||||||||||||| || ||| Sbjct 1050038 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 1050097 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||| | || || Sbjct 1050098 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 1050157 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATT 288482 ||||||| ||||||||| || ||||| ||||| ||||| ||||||||| ||||| Sbjct 1050158 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTCTTTATT 1050213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652949025088