Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq96 187 3e-42 seq11 129 7e-25 >seq96 Length=723174 Score = 187 bits (206), Expect = 3e-42 Identities = 647/996 (65%), Gaps = 39/996 (4%) Strand=Plus/Plus Query 114277 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 |||||| ||| || || ||||||| || | |||||| || |||| | | || Sbjct 450550 AATAAAAGTATCTGCAAGGCCTTGGATGCCCAAGCCAATGGGACGATAATTAGTGTTGCT 450609 Query 114337 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 114396 | |||| || ||||| || ||||| | | ||||| || | || || || | ||| Sbjct 450610 CCTTCGTGCTGTCTCTACCGGATAGTAGGAGTTGTCGATCACGCGGTTCAGGTTGTAGGT 450669 Query 114397 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 114456 || | || |||| |||| ||| || || ||||| | | |||||| || || Sbjct 450670 TACTTCTTTCGTGACCTCATAGAGCAATTTGTGGTCAAAGGTCTTCGCCTCTTCGTTCAC 450729 Query 114457 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 114516 | || ||||||||||| ||||||| || || || | ||||| || ||||| Sbjct 450730 AAACCGCGGAAGGGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTA 450789 Query 114517 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 114576 ||| |||||||| || || | ||| || | ||||| ||||| | || |||||| ||||| Sbjct 450790 CTCAATAATTTCTGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGA 450849 Query 114577 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 114636 ||| |||| |||||||| || || |||||| | || |||||||| | |||| || Sbjct 450850 CTTCCTGTTGCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTC 450909 Query 114637 GAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCT---- 114692 | |||| ||| | || ||||| | ||| || | ||| || | Sbjct 450910 TAAGATAGTAAACCACAGCTCCTGCGCTGGGA-----TCGTGCGCACCCCCTTCTTTTGT 450964 Query 114693 -CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC---CTCTGAGAGCCCT 114748 ||||| | || | || ||||||||| || ||| || | || ||| ||| Sbjct 450965 GTTTCGTAGCTCACATACAAGGATTCAAACTCCTC-TCCATAGCAATCGCTAAGA-CCCG 451022 Query 114749 GGTGCCTTATCTGGGCA--GAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGA 114806 || | || |||| | | || | ||| || | || | ||||||||||||| Sbjct 451023 GG---CACATGTGGGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGA 451079 Query 114807 AGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC---C 114863 |||| || || ||||| || | ||||||||||||| || | || |||||| | Sbjct 451080 AGAGATCGGGTATCCAAAGGCCGTAGAAGAGATCCCG--CGC-ACGTTGATCATCCTTAC 451136 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 || ||| | || | || ||| || | || || |||||||| || ||||| || | Sbjct 451137 CCGTATTACGCTTCAGCATCAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGA 451196 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 |||| | | ||||| || || ||| |||| | || || | || ||| || | Sbjct 451197 CCGCAAAGGCACCCTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGA 451256 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT 115040 | ||||| ||||| || | || ||| | || |||||||| || |||| || || Sbjct 451257 ACACGCGCAGCATGGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATA-TAG-CT 451314 Query 115041 T--ATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 | | || | || | || | ||||| ||||| || || || |||| ||| Sbjct 451315 TCCAGAGGAACGGATGTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCAC 451374 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 ||||||||| | || || ||||||| || || || || |||| | || || || Sbjct 451375 GGCGCACTCCTTCAGGGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAG 451434 Query 115159 GAAGC---AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 115215 |||| |||| |||||| |||| ||| || |||||||||||||| || ||||| || Sbjct 451435 AAAGCACGAGCT---CATTTGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGC 451491 Query 115216 GTGGATGAACATACCTTGGGACATCTTATCGTAGGT 115251 |||| |||| | || | ||||||| || ||||| Sbjct 451492 GTGGGTGAAGAATCCCTTGGACATCAATTCATAGGT 451527 >seq11 Length=2034363 Score = 129 bits (142), Expect = 7e-25 Identities = 368/555 (66%), Gaps = 17/555 (3%) Strand=Plus/Minus Query 125735 TCTGTG-TCGTCAT-CCAGCTTGCCG-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTC 125791 |||||| || ||| ||||| | | | || || |||||| ||||||||||||||| ||| Sbjct 1273499 TCTGTGCTCATCACACCAGCCTTCTGATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTC 1273440 Query 125792 TTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT 125851 || || | || ||| ||||||| || || ||||| ||| ||||| | | Sbjct 1273439 TTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAATGGATTCGCCGAGTTGTAGTGCTTC 1273380 Query 125852 GGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTC 125911 | |||||| | ||| || || |||| || |||| ||||||| |||| | Sbjct 1273379 TCCTCCCCAAGCGCAACGAGCAGGCGGTCCGCAACAAACTCGATGTACTGCCCCATCAGC 1273320 Query 125912 TCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATT 125971 || |||||||| ||||| || ||| || ||||| |||||||| | | ||| || Sbjct 1273319 TCCGAGTTCATCCCGATCAGCCGCACTGGCAGTGCGTCGCAGATGAACTCGTGCTCGATG 1273260 Query 125972 TCCACGGCTTCCCGCACGATGGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGT 126030 ||||| || ||| | ||| | | | | | | || | ||| || ||| || || Sbjct 1273259 TCCACCGCATCCGTGATGATCTCCAGCACGCGCGACCGCGGCAG--CTTGTGCTTAATGT 1273202 Query 126031 ----CTTGAAGAGTTC-CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGT 126085 | || | || |||| |||| || ||| || |||||||| || ||||| || Sbjct 1273201 GGCGCGTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGC 1273143 Query 126086 TCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 126145 || || |||| || || ||||| | || |||||||| | |||||| | || ||| Sbjct 1273142 TCGTTGCTGAAGGTTAGCCCGGGCATCACGCCGCGCTTCTTAAGCCAGAACAGTGCGCAA 1273083 Query 126146 AATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| || || |||||||| ||||| ||| || ||||| | |||||||| ||| Sbjct 1273082 AATGACCCTGAAAAGAAGATGCCCTCGACAGCTGCAAACGCGACCAGACGCTCCTGGAAG 1273023 Query 126206 GAGCGCGACTTTG-TGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 126264 | || | | | | | |||| || ||||||| ||||| || | ||| || || Sbjct 1273022 CTG----ACCTCGCTCCCGATCCACCGCACCGCCCACGCAGCCTTCTTTTGGATGCATGG 1272967 Query 126265 GACGGTCTGGATCGC 126279 | ||||||||||| Sbjct 1272966 AATCGTCTGGATCGC 1272952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352883175680