Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 192 6e-44 seq96 132 5e-26 seq88 89.7 5e-13 seq44 89.7 5e-13 >seq11 Length=2034363 Score = 192 bits (212), Expect = 6e-44 Identities = 371/539 (69%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 52306 TGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 |||| ||||| || || ||| | || ||| | | || |||||| |||||| || | Sbjct 1272944 TGCTACATGCGATCCAG-ACGATTCCATGCATCCAAAAGAAGGCTGCGTGGGCGGTGCGG 1273002 Query 52365 TGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTCGA 52423 ||||||| |||||| | || ||| | | |||| |||| || || || ||||| Sbjct 1273003 TGGATCGGGAGCGAG---GTCA-GCTTCCAGGAGCGTCTGGTCGCGTTTGCAGCTGTCGA 1273058 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 |||| | || ||||| || ||| ||| | || | |||| | | ||| | || Sbjct 1273059 GGGCATCTTCTTTTCAGGGTCATTTTGCGCACTGTTCTGGCTTAAGAAGCGCGGCGTGAT 1273118 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 |||||| || || |||||||||||| |||| ||||||||||| || |||||||||||||| Sbjct 1273119 GCCCGGGCTAACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTT 1273178 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACG-ATCCTGA 52602 ||||||||| |||| | | | | | | | || | ||| | || | ||| Sbjct 1273179 TGCGTGCCTGCTGTACACGCGCCACATTA-AGCACAAGCTGCCGCGGTCGCGCGTGCTGG 1273237 Query 52603 GCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCG 52662 || ||| ||| ||||||| ||||| | ||||| | | ||| ||||| || Sbjct 1273238 AGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCATCTGCGACGCACTGCCAGTGC 1273297 Query 52663 AGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTC 52722 |||| | || |||||| || || ||| | |||||||||||||||| ||||| || | Sbjct 1273298 GGCTGATCGGGATGAACTCGGAGCTGATGGGGCAGTACATCGAGTTTGTTGCGGACCGCC 1273357 Query 52723 TGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGA 52782 || | || ||| ||| || ||| ||| |||| | ||||| || || || ||| Sbjct 1273358 TGCTCGTTGCGCTTGGGGAGGAGAAGCACTACAACTCGGCGAATCCATTCGACTTCATGG 1273417 Query 52783 ACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 | | || ||||| |||||||||||||||| ||||||||| || ||||||||| || Sbjct 1273418 AGATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGAAGGTTGGCGAGTATCAG 1273476 >seq96 Length=723174 Score = 132 bits (146), Expect = 5e-26 Identities = 450/690 (65%), Gaps = 27/690 (4%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 ||| |||||||||| || ||||| |||||||| |||| | |||||| | || || Sbjct 450742 GGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTACTCAATAATTTC 450801 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT---TTGCGATT 153712 | ||| || ||| |||||| || ||| | | |||| | | || || | || Sbjct 450802 TGTGCATAGATTGGAGCATTTAATCGTGCCGA---TGTGCTTTTGGTTTGACTTCCTGTT 450858 Query 153713 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA-- 153770 |||||| ||||| | |||||| | || | || ||||| | || || || | |||| Sbjct 450859 GCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAGATAGT 450918 Query 153771 AACCTATGCAGGTCCTGCGCTCGCACC---CGCTGCCGATAGCGGCCCTCGC-TCTCGTA 153826 || | | ||| ||||||||| | | | ||| || | | | | | ||||| Sbjct 450919 AAACCA--CAGCTCCTGCGCTGGGATCGTGCGCACCCCCTT----CTTTTGTGTTTCGTA 450972 Query 153827 TCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATG 153886 | | | |||| |||||||| || || ||||| ||| || || || ||| || Sbjct 450973 GCTCACATACAAGGATTCAAACTCCTCTCCATAGCAATCGCTAAGACCCGGGCACATGTG 451032 Query 153887 CGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCAC 153946 ||| ||| |||| ||| | | || | || || || |||||| ||||| || | Sbjct 451033 GGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGTAT 451092 Query 153947 CCAGAGCGCGTACATGAGGTCGCGCGCC--TTGCAATCCTCCGCGCCCATGTTGCGTTTC 154004 ||| || |||| | ||| || ||||| ||| ||| ||| ||| | || || ||| Sbjct 451093 CCAAAGGCCGTAGAAGAGATCCCGCGCACGTTG--ATCATCCTTACCCGTATTACGCTTC 451150 Query 154005 AGATTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC 154063 || | || | | | | | ||||| ||||||||||| || | ||||| || | |||||| Sbjct 451151 AGCATCAGAAACTCGAAA-ATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACC 451209 Query 154064 TTTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCAT 154120 || ||||| ||| |||||||| |||| ||| | | |||||||| ||||||| ||| Sbjct 451210 CTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCAT 451269 Query 154121 GGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCAC 154180 ||| | || ||| | | || || || || | || | ||| || || || | Sbjct 451270 GGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATATAGCTTCCAGAGGAACGGAT 451329 Query 154181 TTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAG 154240 | || |||| | ||||| || ||| | |||| || | ||||| || ||| Sbjct 451330 GTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAG 451389 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 || ||||||||| || |||||||| || Sbjct 451390 GGTGTCGTAGATGCCCTCAATGCTATCCTC 451419 >seq88 Length=784127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || || | | Sbjct 682490 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCA 682431 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 682430 AAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 682371 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | ||| || || ||||| || || Sbjct 682370 TTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTC 682311 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 682310 ACGAAGATCTGCAT 682297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || || | | Sbjct 682995 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCA 682936 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 682935 AAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 682876 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | ||| || || ||||| || || Sbjct 682875 TTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTC 682816 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 682815 ACGAAGATCTGCAT 682802 >seq44 Length=1445935 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || || | | Sbjct 1050011 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCA 1050070 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 1050071 AAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 1050130 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | ||| || || ||||| || || Sbjct 1050131 TTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTC 1050190 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1050191 ACGAAGATCTGCAT 1050204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261804485120