Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 145 7e-30 seq44 109 5e-19 seq88 107 2e-18 >seq11 Length=2034363 Score = 145 bits (160), Expect = 7e-30 Identities = 305/447 (68%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 47136 GAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTC-GGGCAGCTTTGCGGC 47194 || ||| || |||| || || ||||||||| ||||||| || ||| |||||| | Sbjct 1273030 GAGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTGCG-C 1273088 Query 47195 GATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAAT 47254 | || | | || | || || |||||||| || || || ||||||||||| || Sbjct 1273089 ACTGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAACGAGCTGAT 1273148 Query 47255 CTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA-CACTAGAGTCG 47313 |||| | ||||| ||||||||||| ||||||| || || |||| | | | | | Sbjct 1273149 CTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACACGCGCCACATTA- 1273207 Query 47314 ATCAAAAGTTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372 | || ||| || || | | | ||| || || | | || || || | ||| ||| Sbjct 1273208 AGCACAAGCTGC-CGCGGTCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGAG 1273266 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 ||||| || ||| || ||||| | | | || |||||| ||||| ||||| Sbjct 1273267 CACGAGTTCATCTGCGACGCACTGCCAGTGCGGCTGATCGGGATGAACTCGGAGCTGATG 1273326 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATT 47492 | |||||||||| ||||| || ||||||||||||||| ||| | | ||| Sbjct 1273327 GGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAAGCAC 1273386 Query 47493 TACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAAC 47552 ||| || | | |||||||||||| || ||| | | || ||||| |||||||||||||| Sbjct 1273387 TACAACTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCAAC 1273446 Query 47553 TTTTTCGAGAAGCGCGTCGGCGAATAT 47579 || ||||||||| || ||||| ||| Sbjct 1273447 TTCTTCGAGAAGAAGGTTGGCGAGTAT 1273473 >seq44 Length=1445935 Score = 109 bits (120), Expect = 5e-19 Identities = 168/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 1049978 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1050037 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 1050038 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 1050097 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 1050098 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 1050157 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 |||| | | ||| ||||| ||||| || || || || |||||||| || |||||| Sbjct 1050158 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT---TTCTTTATT 1050213 >seq88 Length=784127 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 682523 CCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682464 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 682463 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682404 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 682403 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682344 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | | ||| ||||| ||||| || || || || |||||||| Sbjct 682343 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 683028 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682969 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 682968 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682909 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 682908 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682849 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | | ||| ||||| ||||| || || || || |||||||| Sbjct 682848 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500229399040