Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq96 188 9e-43 seq11 134 2e-26 >seq96 Length=723174 Score = 188 bits (208), Expect = 9e-43 Identities = 855/1335 (64%), Gaps = 44/1335 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || || |||| || | ||||||| ||||||||||| |||| |||||| | ||| ||| Sbjct 450212 TAAATATTGGATGTAAAAGGCTCAATACACTCATTGTTGCCCAGGATTTGCGATGTCGAG 450271 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||||||||||| || || |||||| | || ||| |||||| Sbjct 450272 GCAGTCGGCATGGGTGCCAACAGCAGAGAGTTGCGCATGCCTGAGGATTTAACGCGTTCT 450331 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCT--TTGTCTCCCCCTCCCACATATCAAACTGG 116079 ||||| || ||||| || | | ||| | | || | | |||||| || ||||| Sbjct 450332 TTGAGAGCATCCCAATCCCACCGGCCGCTAGTGGGCTTCTTCCCCCACAGGTCGAACTGC 450391 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC-ATATGGGCCCTCAACCTCCGC 116138 || ||||| || | || || | || | ||| ||| || || || ||| || Sbjct 450392 AGTATACCCTGAGCAGCAGG-GCTCTTGTTGAAGTCGGTATACGGCCCTTCCTTCTCAGC 450450 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 | || | | || | ||| || | ||| || || ||||| || | || | Sbjct 450451 AAGCTCCACGGAAGATTCCACGGCGGCATAATAGATAGTTTCAAAGATCTCTTCGTTAAG 450510 Query 116199 T-GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 |||||| || | | || | |||| | | |||||| ||| || || | Sbjct 450511 GCGCCTTGAT-TCAGGGCATGTGAATGTCTGACGTAAAAGAATAAAAGTATCTGCAAGGC 450569 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGG 116317 |||||| || | |||||| || |||| | | || | |||| || ||||| || | Sbjct 450570 CTTGGATGCCCAAGCCAATGGGACGATAATTAGTGTTGCTCCTTCGTGCTGTCTCTACCG 450629 Query 116318 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 116377 |||| | | ||||| || | || || || | ||| || | || |||| |||| Sbjct 450630 GATAGTAGGAGTTGTCGATCACGCGGTTCAGGTTGTAGGTTACTTCTTTCGTGACCTCAT 450689 Query 116378 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 116437 ||| || || ||||| | | |||||| || ||| || ||||||||||| | Sbjct 450690 AGAGCAATTTGTGGTCAAAGGTCTTCGCCTCTTCGTTCACAAACCGCGGAAGGGCGATAG 450749 Query 116438 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 116497 |||||| || || || | ||||| || |||||||| |||||||| || || | Sbjct 450750 ACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTACTCAATAATTTCTGTGCATA 450809 Query 116498 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 116557 ||| || | ||||| ||||| | || |||||| |||||||| |||| |||||||| | Sbjct 450810 GATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGACTTCCTGTTGCACGCATCTT 450869 Query 116558 TGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT 116617 | || ||||| | || |||||||| | |||| || | |||| ||| | | Sbjct 450870 TATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAGATAGTAAACCACAGCT 450929 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCC-----TCGTACTTTGTGTAGAG 116672 | ||||| | ||| || | ||| || | ||||| | || | Sbjct 450930 CCTGCGCTGGGATCGTGC-----GCACCCCCTTCTTTTGTGTTTCGTAGCTCACATACAA 450984 Query 116673 GGCCTCAAACTCTTCACCCACAGC---CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || |||||||| || || | ||| | || ||| || || | | | ||| | Sbjct 450985 GGATTCAAACTCCTCTCC-ATAGCAATCGCTAAGACCC--GGGCACATGTGGGGATCCAT 451041 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 || | ||| || | || | || |||||||||||||| || || ||||| || || Sbjct 451042 TAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGTATCCAAAG-GC 451100 Query 116790 CG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCC---CCCTGATTGAGACGCAACTCCA 116845 || ||||||||||||| || || |||||| ||| ||| | || | || Sbjct 451101 CGTAGAAGAGATCCCGCGCACG---TTGATCATCCTTACCCGTATTACGCTTCAGCATCA 451157 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG-- 116903 ||| || | || || |||||||| || ||||| || ||||| | | |||||||| Sbjct 451158 GAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACCCTTGCGCT 451217 Query 116904 -ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 || ||| |||| | || || | || || ||| || ||||| ||||| || | || Sbjct 451218 TACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCATGGGCACGA 451277 Query 116963 TACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG--GCTCTGACATCGTG 117020 ||| | || |||||||| || |||| || ||| | | | || | ||| Sbjct 451278 GACCGTTGGAAGTCCCATTTGTGCCAGCAATAT-AG-CTTCCAGAGGAACGGATGTTGTG 451335 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 | ||||| ||||| || || || |||| ||| ||||||||| | || || | Sbjct 451336 AACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAGGGTGTC 451395 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA---CATTTG 117137 |||||| || || || || |||| | || ||||| ||||| ||| |||||| Sbjct 451396 GTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCA---CGAGCTCATTTG 451452 Query 117138 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGA 117197 |||| ||| || |||||||||||||| || ||||| |||||| |||| | || | ||| Sbjct 451453 GGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCCTTGGA 451512 Query 117198 CATCTTATCGTAGGT 117212 |||| || ||||| Sbjct 451513 CATCAATTCATAGGT 451527 >seq11 Length=2034363 Score = 134 bits (148), Expect = 2e-26 Identities = 368/554 (66%), Gaps = 15/554 (3%) Strand=Plus/Minus Query 127208 TCTGTG-TCGTCAT-CCAGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTC 127264 |||||| || ||| ||||| | | | || || || ||| ||||||||||||||| ||| Sbjct 1273499 TCTGTGCTCATCACACCAGCCTTCTGATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTC 1273440 Query 127265 TTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT 127324 || || | || ||| ||||||| || || ||||| ||| ||||| | | Sbjct 1273439 TTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAATGGATTCGCCGAGTTGTAGTGCTTC 1273380 Query 127325 GGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTC 127384 | |||||| | ||| || || |||| || |||| ||||||| |||| | Sbjct 1273379 TCCTCCCCAAGCGCAACGAGCAGGCGGTCCGCAACAAACTCGATGTACTGCCCCATCAGC 1273320 Query 127385 TCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATG 127444 || |||||||| ||||| || ||| || ||||| |||||||| | | ||| ||| Sbjct 1273319 TCCGAGTTCATCCCGATCAGCCGCACTGGCAGTGCGTCGCAGATGAACTCGTGCTCGATG 1273260 Query 127445 TCCACAGCTTCCCGTACGATGGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGT 127503 ||||| || ||| | ||| | | | | | || | ||| || ||| ||| || Sbjct 1273259 TCCACCGCATCCGTGATGATCTCCAGCACGCGCGACCGCGGCAG--CTTGTGCTTAATGT 1273202 Query 127504 ----CTTGAAGAGTTC-CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGT 127558 | || | || ||| ||||| || ||| || |||||||| || ||||| || Sbjct 1273201 GGCGCGTGTACAGCAGGCAC-GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGC 1273143 Query 127559 TCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 127618 || || |||| || || ||||| | || |||||||| | |||||| | || ||| Sbjct 1273142 TCGTTGCTGAAGGTTAGCCCGGGCATCACGCCGCGCTTCTTAAGCCAGAACAGTGCGCAA 1273083 Query 127619 AATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || || |||||||| ||||| ||| || ||||| | |||||||| ||| Sbjct 1273082 AATGACCCTGAAAAGAAGATGCCCTCGACAGCTGCAAACGCGACCAGACGCTCCTGGAAG 1273023 Query 127679 GAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGG 127738 | | || | | | |||| || ||||||| ||||| || | ||| ||||| Sbjct 1273022 ---CTGACCTCGCTCCCGATCCACCGCACCGCCCACGCAGCCTTCTTTTGGATGCATGGA 1272966 Query 127739 ACGGTCTGGATCGC 127752 | ||||||||||| Sbjct 1272965 ATCGTCTGGATCGC 1272952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506463791360