Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq11 176 7e-39 seq96 84.2 3e-11 >seq11 Length=2034363 Score = 176 bits (194), Expect = 7e-39 Identities = 306/438 (70%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||||||||| |||||||||||||||| || || || |||||||| ||||| Sbjct 1273463 ACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAT 1273404 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || ||| | || ||| ||||| || || || | |||| | ||| || ||| Sbjct 1273403 GGATTCGCCGAGTTGTAGTGCTTCTCCTCCCCAAGCGCAACGAGCAGGCGGTCCGCAACA 1273344 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 || |||||||| | |||| |||| |||| ||||| | ||||| || || || || Sbjct 1273343 AACTCGATGTACTGCCCCATCAGCTCCGAGTTCATCCCGATCAGCCGCACTGGCAGTGCG 1273284 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 || | | ||||| | ||| || || ||||| || || | |||| | || |||| || Sbjct 1273283 TCGCAGATGAACTCGTGCTCGATGTCCACCGCATCCGTGATGATCT-CCAG-CACGCGCG 1273226 Query 159884 TACCCCG---GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 ||| || ||||| | ||||||| | | |||| |||||||||||||| |||| Sbjct 1273225 -ACCGCGGCAGCTTGTGCTTAATGTGGCGCGTGTACAGCAGGCACGCAAAGTCCGTGTGC 1273167 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || |||||||| || ||||| | ||||||| | | | || || ||||| | || ||| Sbjct 1273166 AGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCGGGCATCACGCCGCGC 1273107 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGC 160059 || ||||| || | | ||||||| ||| |||| ||||| ||||| || || || Sbjct 1273106 TTCTTAAGCCAGAACA-GTGCGCAAAATGACCCTGAAAAGAAGATGCCCTCGACAGCTGC 1273048 Query 160060 AAACGCCACGAGCCTCTC 160077 |||||| || || | ||| Sbjct 1273047 AAACGCGACCAGACGCTC 1273030 >seq96 Length=723174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/223 (69%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||||||||| |||| ||||||| |||| || | | | || ||||||||||| || Sbjct 449827 GTCCACCGTAAACTTGATGGCGTCGGCGGCTGGGCGCGTGCGAAGGTAGTACATGCCCGT 449886 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC---GTTGGG 203958 ||| |||||| | | ||| | ||| | |||||| ||| | ||| | | | ||| Sbjct 449887 CTTGAGGCCCATTTCCCAGCAGTAGAAATGCATG---GACGTTATGCGCCCGGAGGAGGG 449943 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 | ||||| | ||||||||||||| |||||| ||| | | | || || ||||| Sbjct 449944 TTTTTCCATGAAGAGGTTCAGAGACTGGGATTGGTCAATGTACTTCCCACGGTCAGCGGC 450003 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||| | || | | ||| ||||||||||| || |||||| Sbjct 450004 CATCTGAATCAGATCCCGCTGTGAAATCTCCCAGACAGTCTTG 450046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154245813760