Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11 316 2e-81 seq44 156 4e-33 seq88 149 6e-31 >seq11 Length=2034363 Score = 316 bits (350), Expect = 2e-81 Identities = 639/933 (68%), Gaps = 30/933 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| ||| || ||||| ||||| ||||| ||||| || || || || || |||| Sbjct 1273491 CATCACACCAGCCTTCTGATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTG 1273432 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG--TGCCG 132708 || || || | | ||| || || || || || || | |||||||||||| | || Sbjct 1273431 CAGCGAGATCATCTCCATGAAGTCGAATGGATTCGCCGAGTTGTAGTGCTTCTCCTCCCC 1273372 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768 | || | |||||||| | ||| || || ||||||||||| ||| ||| || | Sbjct 1273371 A--AGCGCAACGAGCAGGCGGTCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAG 1273314 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 || | || | ||| ||||| ||||| || ||| || ||| ||| |||||||| | || Sbjct 1273313 TTCATCCCGATCAGCCGCACTGGCAGTGCGTCGCAGATGAACTCGT-GCTCGATGTCCAC 1273255 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTGCACCAAATG----- 132881 ||| || |||| ||| ||| ||||||| | | |||| | ||| | |||| Sbjct 1273254 CGCATCCGTGATGATCTCCAGCACGCGCGAC---CGCGGCAGCTTGTGCTTAATGTGGCG 1273198 Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 | || ||| || ||| |||||||| |||| ||||||||| | || || || ||||| Sbjct 1273197 CGTGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTT 1273138 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| || | |||||||| | |||||| || || ||||| || | || || ||| Sbjct 1273137 GCTGAAGGTTAGCCCGGGCATCACGCCGCGCTTCTTAAGCCAGAACAGTGC-GCAAAATG 1273079 Query 133002 GCCC-GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 ||| |||||||||| ||||||||| || || || || ||||| ||||| ||| || Sbjct 1273078 ACCCTGAAAAGAAGATGCCCTCGACAGCTGCAAACGCGACCAGACGCTCCTGGAAGCTGA 1273019 Query 133061 CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG 133120 | || ||| ||||||| |||| |||||| | ||||| | || || ||| || |||| Sbjct 1273018 CCTC---GCTCCCGATCCACCGCACCGCCCACGCAGCCTTCTTTTGGATGCATGGAATCG 1272962 Query 133121 TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGA 133180 | | ||| || | | || ||||| || || || | | | ||| ||||| | | Sbjct 1272961 TCTGGATCGCATGTAGCATGCGGAGCTTTTCCTCAGTGTCCATGATGTATGTGTCCAGCA 1272902 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCAC 133239 ||| ||| |||||||| | |||||||| | ||||| || || || ||| Sbjct 1272901 TCACCGAGTACGCCTCCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCA- 1272843 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 |||||||| | || ||| || ||| |||| | || || ||| | |||||| Sbjct 1272842 CGCGCCTCCGGTATCTTCACGTCGGTCATGAAGCGCTGTGCGAGGTTCTCGATCACGATG 1272783 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 |||||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||| Sbjct 1272782 CCGTCGCTTCCCGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCCCCATCGTTC 1272723 Query 133360 AAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGAC 133419 | | |||| || | |||| || |||||| | |||||| || ||||| || Sbjct 1272722 AGCTTCACCCAATCCACCATGTCACTGCCCAGGTCGATCTCCTCCACCGTCCA----GAT 1272667 Query 133420 GC--CTCGGCT--TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCAC 133475 || ||| || | |||||| | | ||| ||||| ||| || || || || | ||| Sbjct 1272666 GCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGATACTGAATCGGGAACAGCAC 1272607 Query 133476 AAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 |||||| ||||| || || ||||||||| Sbjct 1272606 GAACCGGTACGGGTTCTCCTGCTGCAGCGGCTC 1272574 >seq44 Length=1445935 Score = 156 bits (172), Expect = 4e-33 Identities = 180/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 |||| ||||||| || ||||| || ||||| |||||||| || ||| | |||| || || Sbjct 1050211 TAAAGAAATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGA 1050152 Query 38297 GGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 ||||| ||||| | | |||| | || | || |||| ||||| ||||| || |||| Sbjct 1050151 GGCCAGCGACACGATCGATAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCG 1050094 Query 38356 CCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 ||| |||| ||||| || || | |||||||| |||||||| || | ||||| ||| Sbjct 1050093 CCGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCG 1050034 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||| ||||| |||||||||| |||||||||| | | |||||| Sbjct 1050033 GACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGC 1049977 >seq88 Length=784127 Score = 149 bits (164), Expect = 6e-31 Identities = 179/238 (75%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 || ||| ||||| || ||||| || ||||| |||||||| || ||| | |||| || | Sbjct 682794 TTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG 682853 Query 38296 AGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 |||||| ||||| | | |||| | || | || |||| ||||| ||||| || ||| Sbjct 682854 AGGCCAGCGACACGATCGATAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCC 682911 Query 38355 GCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 |||| |||| ||||| || || | |||||||| |||||||| || | ||||| ||| Sbjct 682912 GCCGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGC 682971 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||| ||||| |||||||||| |||||||||| | | |||||| Sbjct 682972 GGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGC 683029 Score = 145 bits (160), Expect = 8e-30 Identities = 178/238 (75%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 || ||| ||||| || ||||| || ||||| |||||||| || ||| | |||| || | Sbjct 682289 TTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG 682348 Query 38296 AGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 |||||| ||||| | | |||| | || | || |||| ||||| ||||| || ||| Sbjct 682349 AGGCCAGCGACACGATCGATAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCC 682406 Query 38355 GCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 |||| |||| ||||| || || | |||||||| |||||||| || | ||||| ||| Sbjct 682407 GCCGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGC 682466 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||| ||||| ||||||| || |||||||||| | | |||||| Sbjct 682467 GGACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCCGCGGCGGC 682524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172199792640