Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq33 307 1e-78 >seq33 Length=1536331 Score = 307 bits (340), Expect = 1e-78 Identities = 991/1527 (65%), Gaps = 21/1527 (1%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| || || || || || |||| | | || || | | |||| || || || | Sbjct 974870 CCCTTGTCGTTGGTGATGGTGATCTGGTTGCGCTTGCCGGTGCCCTTGTCCTCGGCCGTC 974811 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| || || || || || || ||||| | || | || || || ||| | | Sbjct 974810 ACGTTCAGGATGCCGTTGGCGTCCACGTCGAAGGTGACCTCGATCTGCGGCACACCGCGC 974751 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | || || |||| | || || || || || | | ||| ||| | | Sbjct 974750 GGCGCCGGGGGGATCCCCGACAGGTCGAAGGTGCCGAGCAGGTGGCAGTCCTTCGTCATG 974691 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 ||| || || || |||||| || ||| | ||||| || || ||| ||| Sbjct 974690 GCACGCTCGCCCTCGAAGACTTGGATGTGCACGCCGGGTTGGTTGTCCGCGTACGTCGAG 974631 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 |||| || ||||| | || |||||||| || | | || | || ||||| | Sbjct 974630 AAGACCTGGCTCTTCTTCGTCGGGATCGTCGTGTTGCGCTTGATGAGCGCCGTCATGACG 974571 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGA 6994 || || || |||| || || | || || |||||||||| || | |||| | | Sbjct 974570 CCGCCGGCCGTCTCGATGCCGAGCGTGAGCGGGGTCACGTCCAGCAGCAGCAGGCCCTC- 974512 Query 6995 ACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGA 7052 | | | | | ||| | || || | |||| || || || | ||| ||||| || | Sbjct 974511 -CGTCTGCTTGCTCTTGCCGCCGGTCAGGATGAACGCCTGCACGGCCGCGCCGTACGCAA 974453 Query 7053 CCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACA 7112 | ||||| |||||||| || | || ||||| || || ||| || | || || | | Sbjct 974452 CGGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGCCGAAGAACTCGGAGACAA 974393 Query 7113 TTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCG 7172 || | || || || || || || || ||||| | |||| || | ||| Sbjct 974392 GCGCCTGCACCTTGGGAATACGCGTGGAGCCGCCGACGAGCACGACCTCGTGCACCGCGC 974333 Query 7173 ATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACA 7232 || || ||||| ||||| | || ||||| || || || || ||||| | Sbjct 974332 GCTTGTCCATCTTGGAGTCCTGGAGGACGCGCTCGACGGGCTCGATGGTCTTGCGGAAGA 974273 Query 7233 AGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGT 7292 ||| | ||||| ||||| || || |||||||| ||| | | ||| || | || || Sbjct 974272 GGTCGCTGCACAGCTCCTCGAAGCGGGCACGGGTGATGTTGGACTGGAAGTCGATGCTGT 974213 Query 7293 CGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGC 7352 || | | || || || || ||||| | || | || || || | || ||||| |||| Sbjct 974212 CGAAGAGCGCGTCGATCTCGATGGTGGCCTGCGTCGCGGAGGACAGGGTGCGCTTGGCGC 974153 Query 7353 GCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTAT 7412 |||| ||||| || || | ||| || || | ||| || | |||| | || || | Sbjct 974152 GCTCGCACGCGGTGCGCAGACGGCGCAGCGAGCGCTGGCTCGCGGACAGGTCCTTGCCAC 974093 Query 7413 GTTTA---CGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCTT 7466 | || || || ||||| || |||| || | ||| | | |||| || | Sbjct 974092 GGTTCTTGCGCTTGAACTCGTCGCTGAAGAAGTTCACCAGGCGGTTG---TCGAGGTCCT 974036 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | || || | ||| || || || ||||| || || || || ||||| || || || || Sbjct 974035 CGCCGCCGAGGTGGGTGTCGCCGGCGGTGGCCTTCACCTCGAAGATGCCGCCGTCGATCG 973976 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | || || ||||| ||||| || || || ||||| || ||||| |||||| || | Sbjct 973975 TCAGCAGCGTGACATCGAACGTGCCGCCGCCGAGGTCGAAGATGAGGACGTTCCGCTCCT 973916 Query 7587 CG---TCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | || || |||| ||||||||||||||||| ||||| ||||| || || || || | Sbjct 973915 GGCTCTCCGTGCTCTTGTCGAGACCGTACGCGATGGCCGCAGCCGTCGGCTCGTTGATGA 973856 Query 7644 TACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 | || || || || || || || || |||| || || || || || || ||||| Sbjct 973855 TGCGCAG-CACCTCGAGCCCGGCTATCACGCCCGCGTCCTTGGTGGCCTGGCGCTGCGAG 973797 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||||||||| || || ||||| | ||||| | | | || | ||| ||||| ||||| Sbjct 973796 TCGTTAAAGTACGCAGGCACCGTGATCACCGCCTTCTTCACCTGCTTCCCGAGGTACGAC 973737 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 ||||| | || ||||| || || |||||||| ||||| || | || ||| Sbjct 973736 TCCGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCGTGAACGTC 973677 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| || ||| || |||| | |||| || || || | | | | ||| Sbjct 973676 TTCTCCTCGCCGCGGAAGCCAACCTGGATCAGCGGCTTGTCGTCCCCCTTCGTCACCACC 973617 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 ||| ||| ||| | ||||| ||| || ||| ||||| ||| | ||||| Sbjct 973616 TTAAACGGCCAGTGCTTCATGTCGAGCTGCACCAACTGGTCGCTGAACCGCCGCCCGATC 973557 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 || ||||| || || || || ||||||| |||||||| || ||||||||||| ||| Sbjct 973556 AGGCGCTTCGCGTCGAAGACGGTGTTTTGCGGGTTCATCGCAACCTGGTTCTTCGCAGCG 973497 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| || | || | ||| || || || || || || ||||| ||||| || || Sbjct 973496 TCACCGATCAGCC--TC-TCATTGTCGGTGAAGGCCACATAGGATGGCGTCGTCCGGTTG 973440 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || || |||||||| || || || ||||| ||||| ||||| || || |||||||| || Sbjct 973439 CCCTGATCGTTCGCGATGATCTCCACGCGTTCGTTCTGCCACACACCAACGCACGAGTAT 973380 Query 8123 GTTGTTCCTAAATCAATACCGATTGCT 8149 || || || | |||||||| || ||| Sbjct 973379 GTCGTGCCCAGGTCAATACCAATAGCT 973353 Score = 140 bits (154), Expect = 4e-28 Identities = 261/381 (69%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || || | ||| || || || || || || || ||||||| || Sbjct 1305971 TCGAAGTCCTCGCCGCCGAGGTGGGTGTCACCGGCCGTGGCGACAACCTCAAAGAACCCC 1306030 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | || ||| ||||| || || || || || |||||||||| ||| | Sbjct 1306031 TCATCAATTGTCAGCAGCGAGACATCGAAGGTGCCGCCGCCGAGGTCAAAAACGAGGATA 1306090 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | ||| | | || ||| || ||||||||||| ||||| ||||| || || Sbjct 1306091 TTTTTCTCGCCAACCTTATTC------AGCCCGTACGCGATGGCCGCAGCCGTCGGCTCG 1306144 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | |||| ||||| || || || || ||||||| ||||| | || || Sbjct 1306145 TTGATGATGCGCACGACA-TTCAGCCCGGCGATCGTCCCCGCATCCTTCGTGGACTGCCG 1306203 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || || || |||| | |||| ||| | ||||| Sbjct 1306204 CTGACCGTCGTTGAAGTAGGCGGGGACGGTGACCACTGCGTTCATGACCTTCGTGCCGAG 1306263 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || | || || ||||| || | || |||||| ||||| || | || Sbjct 1306264 GTAGGTCTCTGATATCTCCTTCATCTTCTGCAAAATCATCGAGCTGATCTCCTCCGGCGT 1306323 Query 7816 AAACTGTTTCGTTTCACCGTT 7836 ||||||||| | |||| || Sbjct 1306324 GAACTGTTTCTTCGCACCCTT 1306344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132037840640