Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq55 86.0 7e-12 seq96 84.2 3e-11 >seq55 Length=990583 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 136700 CAAAC-GCACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTC 136758 ||||| ||| | ||| |||||||||| ||||||||||||| || |||| |||||||| Sbjct 26638 CAAACAGCATAGCTCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTC 26697 Query 136759 ACGGGTTCGAGCCCCGTTGGGAACAGCTTTTA 136790 || ||||||| ||| ||||||| || ||||| Sbjct 26698 ACAGGTTCGACCCCTGTTGGGAGCACTTTTTA 26729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 26878 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 26819 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 26818 CTGTTGGGAGCA-CTTTT 26802 >seq96 Length=723174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/87 (83%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 136706 CACCGTT---CTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGG 136762 ||||||| || |||||||||| ||||||||||||| || |||| |||||||||| | Sbjct 292475 CACCGTTGCTCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAG 292534 Query 136763 GTTCGAGCCCCGTTGGGAACAGCTTTT 136789 |||||| ||| ||||||| || ||||| Sbjct 292535 GTTCGACCCCTGTTGGGAGCA-CTTTT 292560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975293228800