Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq96 152 6e-32 seq33 86.0 7e-12 >seq96 Length=723174 Score = 152 bits (168), Expect = 6e-32 Identities = 586/909 (64%), Gaps = 11/909 (1%) Strand=Plus/Plus Query 106332 TTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAA 106391 |||| || ||||| || ||||| | |||| || || ||||| || || | ||| | Sbjct 450612 TTCGTGCTGTCTCTACCGGATAGTAGGAGTTGTCGATCACGCGGTTCAGGTTGTAGGTTA 450671 Query 106392 CAATCTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 | ||||| |||| |||| || || | ||||| || | |||||| || ||| Sbjct 450672 CT-TCTTTCGTGACCTCATAGAGCAATTTGTGGTCAAAGGTCTTCGCCTCTTCGTTCACA 450730 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 || ||||||||||| || ||||| ||||| || |||||||| || |||||| Sbjct 450731 AACCGCGGAAGGGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTAC 450790 Query 106511 TCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 106570 || | ||||||||| || | ||||| | |||||||| || | | ||||||||| | Sbjct 450791 TCAATAATTTCTGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGAC 450850 Query 106571 TTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTG 106630 || ||||||||||||| || || |||||| | || |||||||| |||| | || Sbjct 450851 TTCCTGTTGCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCT 450910 Query 106631 AGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTC-CCTCCGCCTC 106689 | || | ||||| || ||||| | | ||| ||| || | | || Sbjct 450911 AAGATAGTAAACCACAGCTCCTGCGCTGGGATCGT-GCGCACCCCCTTCTTTTGTGTTTC 450969 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCT 106748 ||| | || | || |||||||||||| ||| || ||| ||||| || | Sbjct 450970 GTAGCTCACATACAAGGATTCAAACTCCTC-TCCATAGCAATCGCTAAGACCCGGGCACA 451028 Query 106749 TGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTG 106808 ||| ||| | || | ||| || | || | || ||||||||||| || || | Sbjct 451029 TGTGGGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGG 451088 Query 106809 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 | ||||| ||| | |||||||| | || || || | ||| || | Sbjct 451089 GTATCCAAAGGCCGTAGAAGAGATCCCGCGCACGTTGATCATCCTTACCCGTATTACGCT 451148 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | || ||||| | || || |||||||| ||||| |||||||| || | | | Sbjct 451149 TCAGCATCAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCAC 451208 Query 106929 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||| || || ||| | |||| || ||||| || ||| ||| || ||||| |||| Sbjct 451209 CCTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCA 451268 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT-TATTGGCTCTC 107044 | || | | ||| | || |||||||| || |||| || || | || | Sbjct 451269 TGGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATA-TAGCTTCCAGAGGAACGG 451327 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | || | ||||| |||||| || || || |||| ||| || |||||| | Sbjct 451328 ATGTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTC 451387 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | ||||| || | || |||||||| | || || || ||||| | | Sbjct 451388 AGGGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTC 451447 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 || || || | ||| || ||||| |||||||| || ||||| ||||| |||| | || Sbjct 451448 ATTTGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCC 451507 Query 107225 TGGGACATC 107233 | ||||||| Sbjct 451508 TTGGACATC 451516 >seq33 Length=1536331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 156411 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 156470 Query 136226 GGTAGGA 136232 ||||||| Sbjct 156471 GGTAGGA 156477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980092023040