Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq11 172 4e-38 >seq11 Length=2034363 Score = 172 bits (190), Expect = 4e-38 Identities = 403/601 (67%), Gaps = 14/601 (2%) Strand=Plus/Minus Query 29799 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 29858 |||||||| | | ||||| | ||||| || || || || ||||||||||| | ||| Sbjct 206613 CTTCAGCGCTGCAACGTGGTTTTTGTAGATATGCGCATCCCCGAGGGTGTGGACGAGCTC 206554 Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918 ||| || | || ||| || | | || |||| || | || | |||| |||||| Sbjct 206553 TCCGGGCTTTAACCCCGTCGCCTTCGCGATCAGAATTGTCAAAAGGGCGTAGGAGGCGAT 206494 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT- 29977 |||||| || || || || ||||| || | || | |||||||||| ||||||||||| Sbjct 206493 GTTAAAAGGCACGCCAAGTCCCATATCGCAGGAGCGCTGGTAGAGCATACACGAGAGCTC 206434 Query 29978 CTCCGTCGC-----TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || |||||| ||||||| ||||| | | ||||| || || || ||||| Sbjct 206433 CTTCGTCGCCGGGTTCACGTAGAACTGTCCGAGAAGATGGCAGGGCGGGAGTGCCATTTT 206374 Query 30033 GCCCAAGTCTTTGGGGTTCCAGGCGCAC-ACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30091 || | || ||||| || ||| | || || |||| ||| | ||| || || Sbjct 206373 ATGCAGAGCGGACGGATTCCACGC-CACGAAGAGCATCCGCCGGTCGTTTGGATTTGTCT 206315 Query 30092 TGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 30151 ||| | |||||| || | | ||| ||||| ||| |||| ||||| || | Sbjct 206314 TGAGGGTCTCCACGATGTACTTGATCTGGTCCACGCCCTTCCCGTCGTAGTTCGCGCGGT 206255 Query 30152 TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC-- 30209 || ||||||||| || |||||||||| |||||| || ||||| ||||| || || || Sbjct 206254 GGTTCGTGTACTCCGCACCGAAATGCCGCCACTGAAAGCCGTAAACCGGGCCGAGATCCA 206195 Query 30210 TC-CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || |||| | | |||| || || | |||| | ||| | | ||| |||||| | | Sbjct 206194 TCTCCTCGTTCTCGTGC---AATCCGCGGCTGTCAAGAAAAGCGCGGGAGCCGTTGTCAT 206138 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 ||||||| | ||||| || ||| ||| | |||||| || | | |||| Sbjct 206137 CCCAGATATGAACCCCTTTATCGCTTAGCAGCCGTGCGTTTGTCTCGCCGCGCAAAAACC 206078 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACT 30388 ||||||||||||| || | ||||||||| | ||||| ||||| | ||||| || Sbjct 206077 ACAGCAGCTCCTCGGAAACACCACGCCAAAAGACGCGTTTGGTGGTGAGCAAGGGAAGCT 206018 Query 30389 G 30389 | Sbjct 206017 G 206017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617121917408