Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11 129 1e-24 >seq11 Length=2034363 Score = 129 bits (142), Expect = 1e-24 Identities = 352/528 (67%), Gaps = 17/528 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 1273476 CTGATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATCTC 1273417 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||| || || | | ||| || | | || |||| | | |||| Sbjct 1273416 CATGAAGTCGAATGGATTCGCCGAGTTGTAGTGCT-TCTCCTCCCCAAGCGCAACGAGCA 1273358 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | ||||| || |||||||||| | ||| || |||||| || || || Sbjct 1273357 GGCGGTCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAGTTCATCCCGATCAGCC 1273298 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| |||| || | || ||||| | ||| || | ||| || ||| | |||| Sbjct 1273297 GCACTGGCAGTGCGTCGCAGATGAACTCGTGCTCGATGTCCACCGCATCCGTGATGATCT 1273238 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCA----GGTGCTTGGCATAGAGCATGCAG 48133 | ||||| ||| | | |||| || | || || || || |||| ||| Sbjct 1273237 CCAGCACGCGCGACCGCGGCAGCTTGT-GCTTAATGTGGCGCGTG---TACAGCAGGCAC 1273182 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||||||| |||||| ||| ||||| || ||| ||| ||||| |||| || || Sbjct 1273181 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCG 1273122 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAA-GAGCCAGAGAAGAAGAT 48252 ||||| || || | || || |||||||| | ||| || ||| || || || |||||||| Sbjct 1273121 GGCATCACGCCGCGCTTCTTAAGCCAGAACAGTGC-GCAAAATGACCCTGAAAAGAAGAT 1273063 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGA 48311 |||||| || || || |||||| || | ||| | | ||||| | || | || Sbjct 1273062 GCCCTCGACAGCTGCAAACGCGACCAGACGCTC-CTG---GAAGCTGACCTCGCTCCCGA 1273007 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 |||| | |||||| | |||||||| | ||||||||| ||||||| Sbjct 1273006 TCCACCGCACCGCCCACGCAGCCTTCTTTTGGATGCATGGAATCGTCT 1272959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531682160640