Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 127 4e-24 seq96 95.1 2e-14 >seq11 Length=2034363 Score = 127 bits (140), Expect = 4e-24 Identities = 528/820 (64%), Gaps = 23/820 (3%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || ||||| || |||| || ||||||| | ||| | ||| | | Sbjct 1272669 CTGGACGGTGGAGGAGATCGACCTGGGCAGTGACATGGTGGATTGGGTGAAGCTGAA--C 1272726 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| || || ||||| ||||| | || ||||| || | || || || Sbjct 1272727 GATGGGGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCGGGAAGCGACGGCATC 1272786 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTG 25688 |||| |||||| || || | |||| | || ||| || ||| |||||| ||| Sbjct 1272787 GTGATCGAGAACCTCGCACAGCGCTTCATGACCGACGTGAAGATACC-GGAGGCGC-GTG 1272844 Query 25689 T-TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTC 25747 ||||| || || ||| || || || ||| | ||||| |||| ||| | | | | Sbjct 1272845 CGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGGCGTACTCGGTGATGC 1272904 Query 25748 TGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGC-TGTTTGGTGCCATCGAGCAC 25806 || || ||||| | ||| | || | || || || || | ||| ||| || Sbjct 1272905 TGGACACATACATCATGGACACTGAGGAAA-AGCTCCGCATGCTACATGCGATCCAGACG 1272963 Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT 25866 || || ||||| | | |||||| |||||| || ||||||| ||| || | Sbjct 1272964 ATTCCATGCATCCAAAAGAAGGCTGCGTGGGCGGTGCGGTGGATCGGGAGCGAGGTC--- 1273020 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCT--TTTTCAGCGGTT 25924 | || ||||| ||||| || ||||| ||||| |||||||||| ||||||| ||| Sbjct 1273021 AGCTTCCAGGAGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAG-GGTC 1273079 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 ||||| || | |||||||| ||| || || ||||||||||| ||| || Sbjct 1273080 ATTTTGC-GCACTGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCA 1273138 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGG 26044 ||||||| ||| | |||||||| || |||| || ||||| |||||||| |||||| Sbjct 1273139 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACACGC 1273198 Query 26045 GCCACTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTG 26103 ||||| | ||||| | | | | ||| || || ||||||| || || ||| Sbjct 1273199 GCCACATTAAGCACAAGCTGCCGCGGTCGCGCGTGCTGGAG-ATCATCACGGATGCGGTG 1273257 Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163 || |||||| | ||||| | || |||||| | Sbjct 1273258 GACATCGAGCACGAGTTCATCTGCGACGCACTGCCAGTGCGGCTGATCGGGATGAAC-TC 1273316 Query 26164 AGA-CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGAC 26221 || || ||| | || ||||| |||| ||| || |||| ||||| || | ||| || Sbjct 1273317 GGAGCTGATGGGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGC-GCTTGGGG 1273375 Query 26222 TCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281 | | | ||||| || | || || |||||||| ||||| | || ||| || | | Sbjct 1273376 AGGAGAAGCACTACAACTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGG 1273435 Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | |||||||||||||| || |||| ||| ||||| ||||| Sbjct 1273436 GCAAGACCAACTTCTTCGAGAAGAAGGTTGGCGAGTATCA 1273475 >seq96 Length=723174 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAG--TGCTTGTTGTCTTTGACCCTCT 222038 || || || ||| || |||| ||| || ||||| | ||| || |||| || | || Sbjct 451016 AGACCCGGGCACATGTGGGGATCCATTAGCGTCCAGCTTCCTTCTT--CTTTTACACGCT 451073 Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098 ||||||||| || || ||||| || | | |||||||| | | || || || ||| Sbjct 451074 TCATGAAGAGATCGGGTATCCAAAGGCCGTAGAAGAGATCCCGCGCACGTTGATCATCCT 451133 Query 222099 CGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGAT 222158 || | || | |||| || |||||| ||||||||||||||||| |||||||||| Sbjct 451134 TACCCGTATTACGCTTCAGCATCAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGAT 451193 Query 222159 AGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||| || | || || ||||| |||||||||||| || Sbjct 451194 AGACCGCAAAGGCACCCTTGCGCTTACCGCCACCCTGATCAAC 451236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843685386240