Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq96 129 7e-25 >seq96 Length=723174 Score = 129 bits (142), Expect = 7e-25 Identities = 582/910 (64%), Gaps = 13/910 (1%) Strand=Plus/Minus Query 75289 GATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAG 75348 ||||||| | || | |||| ||||| ||||| || |||||||| ||||| || ||| | Sbjct 451516 GATGTCCAAGGGATTCTTCACCCACGCCACACCGACGCTCTTCAACGCTGGCACGCCACG 451457 Query 75349 ACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTA 75408 || || ||| | ||||| || || || | |||||||| || | || ||||| Sbjct 451456 GCCCCAAATGAGCTCGTGCTTTCTCATAGCTATGAAGGAGGATAGCATTGAGGGCATCTA 451397 Query 75409 TGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACAT 75468 | || || | |||||| || ||| |||| || || || |||||| ||||| | Sbjct 451396 CGACACCCTGAAGGAGTGCGCCGTGATCAGTAAGTCAGCCGGTGGGATTGGGCTGCACGT 451337 Query 75469 CCATGATGTGAGAGCCAATA-AATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTA 75527 || | | | || | || || |||| || |||||||| || | ||| Sbjct 451336 TCACAACATCCGTTCCTCTGGAAGCTA-TATTGCTGGCACAAATGGGACTTCCAACGGTC 451278 Query 75528 TTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT- 75586 | | || ||||| ||||| || ||| ||| || ||||| || |||| | || || Sbjct 451277 TCGTGCCCATGCTGCGCGTGTTCAACAACACCGCCCGCTACGTTGATCAGGGTGGCGGTA 451218 Query 75587 --CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCC 75644 |||||||| || | |||||||| |||| || ||||| || || || | ||||| | Sbjct 451217 AGCGCAAGGGTGCCTTTGCGGTCTATCTGGAGCCCTGGCACGCTGACATTTTCGAGTTTC 451158 Query 75645 TTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCC 75704 | | | | || ||| | || || || | |||||||| | || Sbjct 451157 TGATGCTGAAGCGTAATACGGGTAAGGATGATCAACGTGCGCGGGATCTCTTCTACGGCC 451098 Query 75705 TGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCT 75764 | ||||| || || || ||||||||||| || | || | || ||| | || | Sbjct 451097 TTTGGATACCCGATCTCTTCATGAAGCGTGTAAAAGAAGAAGGAAGCTGGACGCTAATGG 451038 Query 75765 GTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTAC 75823 ||| ||| | || ||||| ||| || ||| |||||||||||| || | || Sbjct 451037 ATCCCCACATGTGCCCGGGTCTTAGCGATTGCTATGGA-GAGGAGTTTGAATCCTTGTAT 450979 Query 75824 ACAAAGTATGAAG-AGGAGGGTAGAGCCAATGCG-ACTGTACCAGCCGCCGATGTTTGGA 75881 | || ||| | | | || | |||| || | ||||| || | ||| Sbjct 450978 GTGAGCTACGAAACACAAAAGAAGGGGG--TGCGCACGATCCCAGCGCAGGAGCTGTGGT 450921 Query 75882 AGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTT 75941 |||| | | | |||| ||||| || || | ||||| || || ||||| | Sbjct 450920 TTACTATCTTAGAGACCCAGATTGAGACGGGTGTTCCTTTCATGCTGTATAAAGATGCGT 450861 Query 75942 GTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGG 76001 | |||| |||| ||||||||| | | || || || || |||| ||||| ||||| | Sbjct 450860 GCAACAGGAAGTCAAACCAAAAGCACATCGGCACGATTAAATGCTCCAATCTATGCACAG 450801 Query 76002 AAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCC 76061 ||||| | |||||||| || |||||||| || ||||| ||||| || ||||||| Sbjct 450800 AAATTATTGAGTACACGTCCCCCGAGGAGACGGCGGTCTGCAACTTGGCGTCTATCGCCC 450741 Query 76062 TTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCA 76121 |||| || ||| || |||||| | || ||||| | || || |||| ||| Sbjct 450740 TTCCGCGGTTTGTGAACGAAGAGGCGAAGACCTTTGACCACAAATTGCTCTATGAGGTCA 450681 Query 76122 C-AAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAG 76180 | ||||| || ||| | || || ||||| || || |||| | ||||| || ||| Sbjct 450680 CGAAAGA-AGTAACCTACAACCTGAACCGCGTGATCGACAACTCCTACTATCCGGTAGAG 450622 Query 76181 ACTGCGCGAA 76190 || || |||| Sbjct 450621 ACAGCACGAA 450612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568884116480