Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 167 3e-35 seq96 141 1e-27 seq1 113 6e-19 seq33 87.8 2e-11 seq24 87.8 2e-11 >seq11 Length=2034363 Score = 167 bits (184), Expect = 3e-35 Identities = 225/309 (73%), Gaps = 7/309 (2%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||||| || | |||||| |||||||||||||||| |||||||||| |||||| Sbjct 1273472 TACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATCTCCATG 1273413 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| || || | || ||||||||||| || || |||| ||||||||||| Sbjct 1273412 AAGTCGAATGGATTCGCCGAGTTGTAGTGCTTCTCCTCCCCAAGCGCAACGAGCAGGCGG 1273353 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || ||||||||||||||||| | ||| || | | |||||| ||||| ||| ||| Sbjct 1273352 TCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAGTTCATCCCGATCAGCCGCACT 1273293 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||| | |||| | ||||| | |||||| || || || || |||||||| || | Sbjct 1273292 GGCAGTGCGTCGCAGATGAACTCGTGCTCGATGTCCACCGCATCCGTGATGATCT-CCAG 1273234 Query 868940 GGCACGTCGGCCGAGG--GCTTG---TTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 868994 | || || ||| || ||||| || | | | |||||| |||||||| ||||||| Sbjct 1273233 CACGCG-CGACCGCGGCAGCTTGTGCTTAATGTGGCGCGTGTACAGCAGGCACGCAAAGT 1273175 Query 868995 CGCAGTGCA 869003 | ||||| Sbjct 1273174 CCGTGTGCA 1273166 Score = 116 bits (128), Expect = 5e-20 Identities = 214/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| ||||| || | ||| || || || || || | | |||| | | | Sbjct 1272886 CCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCACGCGCCTCCGGTATCT 1272827 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || ||||||||| ||||||||||||||| | |||| Sbjct 1272826 TCACGTCGGTCATGAAGCGCTGTGCGAGGTTCTCGATCACGATGCCGTCGCTTCCCGCGA 1272767 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||| | ||| | ||| |||||| | | Sbjct 1272766 AGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCCCCATCGTTCAGCTTCACCCAATCCA 1272707 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | |||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 1272706 CCATGTCACTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 1272647 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || | ||| | | || || | || ||||| || || || |||| ||||| || Sbjct 1272646 ACTTGCGCCAGATGTCGTGATACTGAATCGGGAACAGCACGAACCGGTACGGGTTCTCCT 1272587 Query 869931 GCAACAGGGGTTCG 869944 || ||| || ||| Sbjct 1272586 GCTGCAGCGGCTCG 1272573 Score = 98.7 bits (108), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| |||||||| |||| || |||||||| | |||||||||| Sbjct 1273163 CCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCGGGCATCACGCCGCGCTTC 1273104 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | ||||| || || || || |||||||||||||| || ||||| Sbjct 1273103 TTAAGCCAGAACAGTGCGCAAAATGACCCTGAAAAGAAGATGCCCTCGACAGCTGCAAAC 1273044 Query 869300 CCGATGAGCCGCTC 869313 ||| || ||||| Sbjct 1273043 GCGACCAGACGCTC 1273030 >seq96 Length=723174 Score = 141 bits (156), Expect = 1e-27 Identities = 197/276 (71%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || |||||||| || |||| ||| || ||||| |||||||||||||| |||||||| Sbjct 451228 CTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCATGGGCACGAGACCGTTGGA 451287 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || || ||||| || | ||| || | || || | ||||| || | || Sbjct 451288 AGTCCCATTTGTGCCAGCAATATAGCTTCCAGAGGAACGGATGTTGTGAACGTGCAGCCC 451347 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || ||||| ||||| ||| | ||||||| || || ||||||||||||||||| Sbjct 451348 AATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAGGGTGTCGTAGATGCCCTC 451407 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || || ||||||| | | |||||||||||| |||| || | | |||||| Sbjct 451408 AATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTCATTTGGGGCCGTGGCGTGCC 451467 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||||||||||||| || || || |||||| || Sbjct 451468 AGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAA 451503 Score = 89.7 bits (98), Expect = 6e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 1626984 GTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGT 1627043 ||| || ||||||| ||||||||||||||| || | ||||| || ||||||||||| || Sbjct 449827 GTCCACCGTAAACTTGATGGCGTCGGCGGCTGGGCGCGTGCGAAGGTAGTACATGCCCGT 449886 Query 1627044 CTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCGTC 1627103 ||||||||| ||| |||| ||||| ||||| |||||| ||| | | | Sbjct 449887 CTTGAGGCCCATTTCCCAGCAGTAGAAATGCATGGACGTTATGCGCCCGGAGGAGGGTTT 449946 Query 1627104 GGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCAT 1627163 | | | ||||| || |||||| ||||| | || | | || || || ||||| Sbjct 449947 TTCCATGAAGAGGTTCAGAGACTGGGATTGGTCAATGTACTTCCCACGGTCAGCGGCCAT 450006 Query 1627164 GTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTC 1627220 | || |||| | | | |||||| || |||||| | | ||||||||||| Sbjct 450007 CTGAATCAGATCCCGCTGTGAAATCTCCCAGACAGTCTTGTAAAGAGCCTTGAGGTC 450063 >seq1 Length=634488 Score = 113 bits (124), Expect = 6e-19 Identities = 154/210 (73%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 509044 CCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCA 509103 |||||| || ||||| | | | | | | ||| ||| | || |||| | || | || Sbjct 476888 CCGCGGGTTCGTGCGGAGCGCCTTCTACGACGGGCTCGCCCCGACCGAGTTCTTCTTCCA 476947 Query 509104 CATGATCGGCGGGC-GCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCT 509162 || ||| ||||||| ||||||| ||||| || ||||| || ||||| ||||||||||||| Sbjct 476948 CACGAT-GGCGGGCCGCGAGGGGCTCGTGGATACGGCGGTGAAGACCGCCGAGACGGGCT 477006 Query 509163 ACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCT-GCAGATCAAGCGCGGCGGCCTC 509221 ||||| | ||||| || |||| ||||||||||||| || | | | || |||| | Sbjct 477007 ACATCTACCGCCGCCTCAGCAAGGCGATGGAGAGCCTCGCCG-TGCACTACGACGGCACC 477065 Query 509222 GTGCGCAACGCCAACGGCGACATCGTCCAG 509251 ||||| ||||| ||||| ||||| ||| Sbjct 477066 GTGCGAAACGCGCGCGGCGCGATCGTGCAG 477095 >seq33 Length=1536331 Score = 87.8 bits (96), Expect = 2e-11 Identities = 108/145 (74%), Gaps = 7/145 (5%) Strand=Plus/Plus Query 344146 ggcggcg-cggcgcgcgcCCTCCAAAGGGGCCAGTTGGTGGCCTTCCCCACCGAGACCGT 344204 ||||||| |||||||||| ||| ||| | |||||||||| || || |||||||| Sbjct 1125135 GGCGGCGGCGGCGCGCGCGCTCGTGGCGGGGCGTCTGGTGGCCTTTCCGACGGAGACCGT 1125194 Query 344205 CTACGGCCTCGGCGCCGACGCCACGTCTGACGAG---GCCGTGCGGCGCATCTTTGAGGT 344261 |||||||||||||| ||||| | |||||| || ||||| ||||||| | || Sbjct 1125195 CTACGGCCTCGGCGGGAACGCCCTG---GACGAGCCCGCGGTGCGCCGCATCTACGCCGT 1125251 Query 344262 CAAGGGCCGACCCTCCAACAACCCG 344286 |||||||| ||| | | | ||||| Sbjct 1125252 GAAGGGCCGCCCCGCGACCGACCCG 1125276 >seq24 Length=44238 Score = 87.8 bits (96), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 |||||| | || |||||| | || ||| |||| || |||| ||||||||||||||| | Sbjct 33148 GGAGCGTCTTAAAGGCAAGTATGGCAGGCTCCGAGGGAATTTAATGGGCAAGCGCGTCGA 33089 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 || || |||| ||||||||| || || | || ||| | || ||||| ||||| Sbjct 33088 TTTCTCCTCGCGAACCGTCATCACGGGGGATCCGAATATTGACGTGGATGAGGTTGGCGT 33029 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGA 507258 ||||| | ||| | | |||||| ||||| || || Sbjct 33028 GCCCTTTTCGATTGCCGCGACGCTGACCTTCCCGGA 32993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107131321790432