Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq88 125 6e-24 seq44 118 1e-21 seq96 107 2e-18 >seq88 Length=784127 Score = 125 bits (138), Expect = 6e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||| | | |||||||||||| | || ||||| || || || || || ||||||| || Sbjct 682288 ATTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTG 682347 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 || |||| |||||| | || | || || |||||||| ||||| || || || || Sbjct 682348 GAGGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCG 682407 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 || || || || ||| |||||||||| || || ||||||||||| | | | | Sbjct 682408 CCGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCG 682467 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 || || ||||| || ||||| ||||| || ||| ||||| |||| | ||||| |||| Sbjct 682468 GACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCCGCGGCGGCGTC 682527 Query 24935 ACTGAGCCAACG 24946 | ||||| ||| Sbjct 682528 ATGGAGCCGACG 682539 Score = 125 bits (138), Expect = 6e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||| | | |||||||||||| | || ||||| || || || || || ||||||| || Sbjct 682793 ATTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTG 682852 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 || |||| |||||| | || | || || |||||||| ||||| || || || || Sbjct 682853 GAGGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCG 682912 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 || || || || ||| |||||||||| || || ||||||||||| | | | | Sbjct 682913 CCGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCG 682972 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 || || ||||| || ||||| ||||| || ||| ||||| |||| | ||||| |||| Sbjct 682973 GACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGCGTG 683032 Query 24935 ACTGAGCCAACG 24946 | ||||| ||| Sbjct 683033 ATGGAGCCGACG 683044 >seq44 Length=1445935 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||||| || || |||| | Sbjct 1050204 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 1050145 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1050144 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1050085 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 1050084 CAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1050025 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| | ||||| ||| Sbjct 1050024 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGC 1049977 >seq96 Length=723174 Score = 107 bits (118), Expect = 2e-18 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTC 139458 || || ||| ||||||| ||||| || ||||| | || | | | ||| ||||| Sbjct 451064 TTTACACGCTTCATGAAGAGATCGGGTATCCAAAGGCCGTAGAAGAGATCCCGCGCACGT 451123 Query 139459 TTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCAT 139518 | ||| ||| |||| | ||||| |||| | || || || |||| |||||||||||| Sbjct 451124 TGATCATCCTTACCCGTATTACGCTTCAGCATCAGAAACTCGAAAATGTCAGCGTGCCAG 451183 Query 139519 GGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGT 139575 || |||||||||| || | || || || || || |||||| ||||| |||| || Sbjct 451184 GGCTCCAGATAGACCGCAAAGGCACCCTTGCGCTTACCGCCACCCTGATCAACGTAGCGG 451243 Query 139576 ACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGC 139633 | | || ||||| ||||||| ||| ||| | |||||| | | || || || |||| Sbjct 451244 GCGGTGTTGTTGAACACGCGCAGCATGGGCACGAGACCGTTGGAAGTCCCATTTGTGC 451301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897060122880