Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 158 2e-32 seq96 125 1e-22 seq9 109 9e-18 seq1 98.7 2e-14 >seq11 Length=2034363 Score = 158 bits (174), Expect = 2e-32 Identities = 227/316 (72%), Gaps = 7/316 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||| ||||||||| || | |||||| |||||||||||||||| ||| Sbjct 1273487 ACACCAGCCTTCTGATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 1273428 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 ||||||| |||||| | ||| || || |||| |||||||||||| ||| ||| Sbjct 1273427 GAGATCATCTCCATGAAGTCGAATGGATTCGCCGAGTTGTAGTGCTTCTCCTCCCCAAGC 1273368 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | | ||||||||||| || || || || |||||||| | ||| || | | |||||| Sbjct 1273367 GCAACGAGCAGGCGGTCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAGTTCATC 1273308 Query 794073 CCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132 ||||| ||| ||| ||||| | |||| || ||||| | |||||| || || || || Sbjct 1273307 CCGATCAGCCGCACTGGCAGTGCGTCGCAGATGAACTCGTGCTCGATGTCCACCGCATCC 1273248 Query 794133 ATGATGATCTGCCTG--GGCACGTCGGACGACGGCTTG---TCGACGAGCATCGTGTAGA 794187 ||||||||| || | || || | | || | ||||| | | | | |||||| | Sbjct 1273247 GTGATGATCT-CCAGCACGCGCGACCG-CGGCAGCTTGTGCTTAATGTGGCGCGTGTACA 1273190 Query 794188 GCAGGCAGGCAAAGTC 794203 ||||||| |||||||| Sbjct 1273189 GCAGGCACGCAAAGTC 1273174 Score = 134 bits (148), Expect = 2e-25 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| |||| | || || |||||||||| || |||||||| |||||||||| Sbjct 1272839 GCCTCCGGTATCTTCACGTCGGTCATGAAGCGCTGTGCGAGGTTCTCGATCACGATGCCG 1272780 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| | ||||| |||||||| ||||||||||| ||||| ||||| | ||| | ||| Sbjct 1272779 TCGCTTCCCGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCCCCATCGTTCAGC 1272720 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 ||||| | ||| |||| ||| ||||||| |||||| | ||||| | | || | Sbjct 1272719 TTCACCCAATCCACCATGTCACTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 1272660 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || || || | || |||||||| || || || Sbjct 1272659 TCCTGCTCCTTGTACTTGCGCCAGATGTCGTGATACTGAATCGGGAACAGCACGAACCGG 1272600 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 | |||||||| | ||||||||||| Sbjct 1272599 TACGGGTTCTCCTGCTGCAGCGGCTCG 1272573 Score = 105 bits (116), Expect = 1e-16 Identities = 217/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| |||||||| ||| || |||||||| | |||||||||| Sbjct 1273163 CCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCGGGCATCACGCCGCGCTTC 1273104 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || || || || || || |||||||||||||| || ||||| Sbjct 1273103 TTAAGCCAGAACAGTGCGCAAAATGACCCTGAAAAGAAGATGCCCTCGACAGCTGCAAAC 1273044 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || ||||| || || || || | | ||||||| || ||||||| Sbjct 1273043 GCGACCAGACGCTCCTGGAAGCTGACCTCGCTCCC------GATCCACCGCACCGCCCAC 1272990 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| || | | || | ||| | ||| || | | | | || ||| || Sbjct 1272989 GCAGCCTTCTTTTGGATGCATGGAATCGTCTGGATCGCATGTAGCATGCGGAGCTTTTCC 1272930 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | |||| ||| ||| ||||| | | | |||||| | ||| |||||||| || || Sbjct 1272929 TCAGTGTCCATGATGTATGTGTCCAGCATCACCGAGTACGCCTCCGAGTGGATATTCTCC 1272870 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || | ||| || ||||| || Sbjct 1272869 ATCATCAGCTGAAACCCATAGAA 1272847 >seq96 Length=723174 Score = 125 bits (138), Expect = 1e-22 Identities = 186/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || ||||| || |||| ||| || ||||| ||||||||||| || |||||||| Sbjct 451228 CTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCATGGGCACGAGACCGTTGGA 451287 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 || || ||||| || | ||| || |||| || | ||||| || | || Sbjct 451288 AGTCCCATTTGTGCCAGCAATATAGCTTCCAGAGGAACGGATGTTGTGAACGTGCAGCCC 451347 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || ||||| | ||| ||| | ||||||| ||||| || |||||||||||||| Sbjct 451348 AATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAGGGTGTCGTAGATGCCCTC 451407 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || || ||||||| | | ||||||||||| |||| || || | |||||| Sbjct 451408 AATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTCATTTGGGGCCGTGGCGTGCC 451467 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 || ||||||||||| || || || Sbjct 451468 AGCGTTGAAGAGCGTCGGTGTGGC 451491 Score = 95.1 bits (104), Expect = 2e-13 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| || ||||||| |||||||| |||||| || || ||||| || ||||||||||| || Sbjct 449827 GTCCACCGTAAACTTGATGGCGTCGGCGGCTGGGCGCGTGCGAAGGTAGTACATGCCCGT 449886 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGAC 2069372 ||||||||| ||| |||| ||||| ||||| ||| | ||| | ||| Sbjct 449887 CTTGAGGCCCATTTCCCAGCAGTAGAAATGCATGGACGTTATGCGCCCGG-AGGAGGGTT 449945 Query 2069373 GGCACA-GTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCA 2069431 || | ||||||| || |||||| ||||| | || | | ||||| || |||| Sbjct 449946 TTTCCATGAAGAGGTTCAGAGACTGGGATTGGTCAATGTACTTCCCACGGTCAGCGGCCA 450005 Query 2069432 TGTCGAT--GGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | | || | || ||| || || | |||||| || |||||| | || |||||||| Sbjct 450006 TCTGAATCAGATCCCGCTGT--GAAATCTCCCAGACAGTCTTGTAAAGAGCCTTGAG 450060 >seq9 Length=318996 Score = 109 bits (120), Expect = 9e-18 Identities = 137/184 (74%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||| |||||||||||| ||||| | | ||||||| | || || || || ||| || | Sbjct 205624 TTGGAGACGGCCTTGGTGCCCTCCGCCATGGCGTGCTTCGCGAGCTCCGCGGGCAGGACC 205683 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGC---TTGTTAGTGCGC 1485591 ||||| ||||| ||||||| |||||||| ||| | || | ||| ||||| ||| Sbjct 205684 AGGCGGACGGCCGTCTGGAGCTCGCGGGCGCCCAGCG---TCCGCTTTTTGTTCACCCGC 205740 Query 1485592 GCCAGGCGGC-CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||| || | ||||||| || ||||||| |||| | |||||| ||||| ||||||| Sbjct 205741 ACCA-ACGTCGCGGCCTCCGTCGCGATGCGCTCGAAGAGGTCGTTCACAAAGGAGTTCAC 205799 Query 1485651 GATC 1485654 |||| Sbjct 205800 GATC 205803 >seq1 Length=634488 Score = 98.7 bits (108), Expect = 2e-14 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 431030 CCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCA 431089 |||||| || ||||| | | | | | | ||| ||| | || |||| | || | || Sbjct 476888 CCGCGGGTTCGTGCGGAGCGCCTTCTACGACGGGCTCGCCCCGACCGAGTTCTTCTTCCA 476947 Query 431090 CATGATCGGCGGGC-GCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCT 431148 || ||| ||||||| ||||||| ||||| || ||||| || ||||| ||||||||||||| Sbjct 476948 CACGAT-GGCGGGCCGCGAGGGGCTCGTGGATACGGCGGTGAAGACCGCCGAGACGGGCT 477006 Query 431149 ACATCCAGCGTCGGTGCATCAAATCGATGGAGAGCCT-GCAGATCAAGCGCGGCGGCCTC 431207 ||||| | || || || ||| ||||||||||||| || | | | || |||| | Sbjct 477007 ACATCTACCGCCGCCTCAGCAAGGCGATGGAGAGCCTCGCCG-TGCACTACGACGGCACC 477065 Query 431208 GTGCGCAACGCCAACGGCGACATTGTCCAG 431237 ||||| ||||| ||||| || || ||| Sbjct 477066 GTGCGAAACGCGCGCGGCGCGATCGTGCAG 477095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916236188042144