Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq44 91.5 1e-13 seq88 89.7 4e-13 >seq44 Length=1445935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613 ||||||| || || || || || | || ||||| || || | |||| |||||| Sbjct 1050206 AAATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCA 1050147 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||| || ||| | || || ||||| || || || ||| | || ||| | Sbjct 1050146 GCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 1050087 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| | || || | |||||| || ||||||||||| | | || | |||||||||| Sbjct 1050086 AGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 1050027 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || |||||||| ||| ||||| ||||| || Sbjct 1050026 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTG 1049992 >seq88 Length=784127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 107550 TTTAAA--ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 |||||| ||||| || || || || || | || ||||| || || | |||| || Sbjct 682794 TTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG 682853 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 |||| |||| || ||| | || || ||||| || || || ||| | || Sbjct 682854 AGGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGC 682913 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 ||| |||||| | || || | |||||| || ||||||||||| | | || | |||| Sbjct 682914 CGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGG 682973 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||| || |||||||| ||| ||||| ||||| || Sbjct 682974 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTG 683014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 107550 TTTAAA--ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 |||||| ||||| || || || || || | || ||||| || || | |||| || Sbjct 682289 TTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG 682348 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 |||| |||| || ||| | || || ||||| || || || ||| | || Sbjct 682349 AGGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGC 682408 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 ||| |||||| | || || | |||||| || ||||||||||| | | || | |||| Sbjct 682409 CGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGG 682468 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||| || |||||||| ||| | ||| ||||| || Sbjct 682469 ACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTG 682509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876333314144