Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11 223 3e-53 seq96 196 5e-45 seq44 127 2e-24 seq88 125 7e-24 >seq11 Length=2034363 Score = 223 bits (246), Expect = 3e-53 Identities = 376/537 (70%), Gaps = 13/537 (2%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 |||||||| || ||||| || ||||| || ||||||| || ||| || | | ||| Sbjct 1273472 TACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATCTCCATG 1273413 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGG 120474 || ||||| || || || ||| ||| ||| || || | | |||||||| ||| Sbjct 1273412 AAGTCGAATGGATTCGCCGAGTTGTAGTGCTTCTCCTCCCCAAGCGCAACGAGCAGGCGG 1273353 Query 120475 TCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACC 120534 ||||| |||||||| ||||||| | ||| || || |||||| || | || | ||| Sbjct 1273352 TCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAGTTCATCCCGATCAGCCGCACT 1273293 Query 120535 GGCAACGCCGACGT-GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAG 120593 |||| || | || || ||||| | ||| ||||||||||| ||| ||| || | || Sbjct 1273292 GGCAGTGC-GTCGCAGATGAACTCGTGCTCGATGTCCACCGCATCCGTGATGATCTCCAG 1273234 Query 120594 CATAGTGTGGCCG-GGCATCTTGTGTTCGATG---CGCGTTCGGTAGTACAGGCACGCAA 120649 || | | | ||| |||| |||||| | ||| ||||| ||| ||||||||||| Sbjct 1273233 CAC-GCGCGACCGCGGCAGCTTGTGCTTAATGTGGCGCGT---GTACAGCAGGCACGCAA 1273178 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||||||||||||||||||||| |||||||||||||| || || || ||||||| Sbjct 1273177 AGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCGGGCA 1273118 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 | | ||| | |||| | |||| | ||| ||| || |||||||| | ||||| Sbjct 1273117 TCACGCCGCGCTTCTTAAGCCAGAACAGTGCGCAAAATGACCCTGAAAAGAAGATGCCCT 1273058 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829 | || ||||| ||||||| ||||| || | | || ||| |||||||| Sbjct 1273057 CGACAGCTGCAAACGCGACCAGACGCTCCTGGAAGCTGAC---CTCGCTCCCGATCCACC 1273001 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886 || |||||| | ||||| || | | ||| || ||| || || ||| | |||| Sbjct 1273000 GCACCGCCCACGCAGCCTTCTTTTGGATGCATGGAATCGTCTGGATCGCATGTAGCA 1272944 >seq96 Length=723174 Score = 196 bits (216), Expect = 5e-45 Identities = 574/873 (66%), Gaps = 31/873 (4%) Strand=Plus/Plus Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 ||||||||| || | ||||| || |||||||| || |||| ||||||| | || || Sbjct 450742 GGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTACTCAATAATTTC 450801 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||| |||||| |||||| ||| ||| | || |||||| || ||| |||||||| Sbjct 450802 TGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGACTTCCTGTTGCA 450861 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AAC 148997 ||| || || ||||||||| | || | || || || | ||| || || | || || Sbjct 450862 CGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAGATAGTAAA 450921 Query 148998 CGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTC--GTATAAAG 149055 | | ||| |||||||| | | |||| ||| || ||| || || | | Sbjct 450922 CCA--CAGCTCCTGCGCTGGGA--------TCGT-GCGCACCCCCTTCTTTTGTGTTTCG 450970 Query 149056 TA-------TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 || |||| || ||| |||| || ||||||||| ||||| |||||| || Sbjct 450971 TAGCTCACATACAAGGATTCAAACTCCTCTCCATAGCAATCGCTAAGACCCGGGCACATG 451030 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 || || ||| |||| ||| || || | | || |||||||| || |||||||| Sbjct 451031 TGGGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGT 451090 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCATGTTGCGGCG 149227 | ||| || |||| | ||| || ||||| | | | || || ||| | || || Sbjct 451091 ATCCAAAGGCCGTAGAAGAGATCCCGCGCACGTTGA-TCATCCTTACCCGTATTACGCTT 451149 Query 149228 CAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC 149287 ||| | || | ||| ||||| |||||||| ||||| | || ||||| | || || Sbjct 451150 CAGCATCAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACC 451209 Query 149288 CTTGCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCAT 149344 ||||||||| ||| ||||| || |||| ||| | ||||||| ||||| || | ||| Sbjct 451210 CTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCAT 451269 Query 149345 AGGTTCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCA 149403 || | | || ||| ||| || || || ||| ||| || || | || | Sbjct 451270 GGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGC-AATATAGCTTCCAGAGGAACGGA 451328 Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGA 149463 ||||| |||| | || || || ||| | |||| ||| | ||||| || | Sbjct 451329 TGTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCA 451388 Query 149464 GCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACA 149523 | || |||||||||||| ||||| || |||||| | | ||||||||||||| || Sbjct 451389 GGGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTCA 451448 Query 149524 TTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCT 149583 |||| || ||||||| || ||| | || || ||||||| || || || || Sbjct 451449 TTTGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCCT 451508 Query 149584 GGCTCATCATCTCGTACGACTCGAG-CACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 | ||||| || || | ||||| ||| |||| || ||||| || || | Sbjct 451509 TGGACATCAATTCATA-GGTTCGAGCCACTTTCTCCAAGTTCCTTCCATGAATCCCAAGT 451567 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 ||||| |||| | ||| ||||| || |||||| Sbjct 451568 GCGACACGCAGGATCATGTGCTGAGGGCGCTCC 451600 Score = 109 bits (120), Expect = 5e-19 Identities = 303/462 (66%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 147935 GTAGGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGC 147994 || ||| || || | ||||| || |||||||||||||||||||||||||| ||| Sbjct 449848 GTCGGCGGCTGGGCGCGTGCGAAGGTAGTACATGCCCGTCTTGAGGCCCATTTCCCAGCA 449907 Query 147995 GTAGTCGTGCACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGA 148054 |||| |||| |||| ||| || | | | || | || || || || | || Sbjct 449908 GTAGAAATGCATGGACGTTATGCGCCCGGAGGAGGGTTTTTCCATGAAGAGGTTCAGAGA 449967 Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG-TCGCTTTATCT 148113 |||| ||||||||| || ||||||||||||||||| | ||| || || | | | Sbjct 449968 CTGGGATTGGTCAATGTACTTCCCACGGTCAGCGGCCATCTGAATCAGATCCCGCTGT-G 450026 Query 148114 TCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCT 148173 ||||||||| | |||||||| || ||||| | || |||||| | | | | Sbjct 450027 AAATCTCCCAGACAGTCTTGTAAAGAGCCTTGAGGTCCTCATCAATGCCTTTCACAGGTT 450086 Query 148174 GCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCT 148233 | | || ||| | || ||||| ||| || || || | | | ||| Sbjct 450087 GAATAGAACCGTTAAATGTAATAATCTCATTACGAATGGTATCATTCCACATCCCACGCT 450146 Query 148234 CGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC 148293 ||||||| ||| | ||| |||| |||| || | ||||| || || || || | Sbjct 450147 CGATCAGATCACGCACCAGGTACTTGTTCAAGACGGGGAACTCTCCACTTAGAACACGAC 450206 Query 148294 GCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 ||| || | ||| ||||| || |||| |||| |||||||||| || |||| | Sbjct 450207 GCACGTAAATATTGGATGTAAAAGGCTCAATACACTCATTGTTGCCCAGGATTTGCGATG 450266 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCA 148395 ||| || || |||||| || | |||||| |||||||||| Sbjct 450267 TCGAGGCAGTCGGCATGGGTGCCAACAGCAGAGAGTTGCGCA 450308 >seq44 Length=1445935 Score = 127 bits (140), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| |||||||||||| Sbjct 1050008 GTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCC 1050067 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1050068 GCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 1050127 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| ||| |||||| |||| | || || ||||| ||||| || Sbjct 1050128 ACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTC 1050187 Query 133644 TTTACGAAAATCTGCATGGCTTATTTATT 133672 || ||||| |||||||| || |||||| Sbjct 1050188 TTCACGAAGATCTGCAT---TTCTTTATT 1050213 >seq88 Length=784127 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| |||||||||||| Sbjct 682493 GTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCC 682434 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 682433 GCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 682374 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| ||| |||||| |||| | || || ||||| ||||| || Sbjct 682373 ACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTC 682314 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 682313 TTCACGAAGATCTGCAT 682297 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| |||||||||||| Sbjct 682998 GTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCC 682939 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 682938 GCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 682879 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| ||| |||||| |||| | || || ||||| ||||| || Sbjct 682878 ACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTC 682819 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 682818 TTCACGAAGATCTGCAT 682802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420219895040