Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq88 91.5 1e-13 seq44 91.5 1e-13 >seq88 Length=784127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || | ||| ||||| | || || Sbjct 682506 CACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 682447 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||| ||||||||| || |||| | || || ||||| Sbjct 682446 CAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 682387 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| |||| || | |||||||| | ||||| || | || |||||| || Sbjct 682386 GATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTT 682327 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| || || ||||||||||| Sbjct 682326 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || | ||| ||||| | || || Sbjct 683011 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 682952 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||| ||||||||| || |||| | || || ||||| Sbjct 682951 CAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 682892 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| |||| || | |||||||| | ||||| || | || |||||| || Sbjct 682891 GATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTT 682832 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| || || ||||||||||| Sbjct 682831 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 >seq44 Length=1445935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || | ||| ||||| | || || Sbjct 1049995 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 1050054 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||| ||||||||| || |||| | || || ||||| Sbjct 1050055 CAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1050114 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| |||| || | |||||||| | ||||| || | || |||||| || Sbjct 1050115 GATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTT 1050174 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| || || ||||||||||| Sbjct 1050175 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 1050204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703615416320