Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq96 156 4e-33 seq11 120 3e-22 >seq96 Length=723174 Score = 156 bits (172), Expect = 4e-33 Identities = 569/874 (65%), Gaps = 35/874 (4%) Strand=Plus/Plus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTC 147518 |||||||||||||| |||||||| |||||||| |||| | |||||| | ||||| Sbjct 450742 GGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTACTCAATAATTTC 450801 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTT---TTCCGATT 147575 | ||| || ||| |||||| || || | | |||| | | || |||| || Sbjct 450802 TGTGCATAGATTGGAGCATTTAATCGTGCCGA---TGTGCTTTTGGTTTGACTTCCTGTT 450858 Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA-- 147633 |||||| ||||| | |||||| | || | || ||||| | || || || | |||| Sbjct 450859 GCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAGATAGT 450918 Query 147634 AACCTATGCAGGTCCTGCGCTCGCACC---CGCTGCCGATAGCGGCCCTCGT-TTTCGTA 147689 || | | ||| ||||||||| | | | ||| || | | | || ||||||| Sbjct 450919 AAACCA--CAGCTCCTGCGCTGGGATCGTGCGCACCCCCTT----CTTTTGTGTTTCGTA 450972 Query 147690 CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATG 147749 | | | ||||| |||||||| || || ||||||||| ||| || || ||| || Sbjct 450973 GCTCACATACAAGGATTCAAACTCCTCTCCATAGCAATCGCTAAGACCCGGGCACATGTG 451032 Query 147750 CGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCAC 147809 ||| ||| |||| ||| | | || | || || || ||| || ||||| || | Sbjct 451033 GGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGTAT 451092 Query 147810 CCACAGCGCGTACATAAGATCGCGCGCT--TTGCAATCCTCGGCGCCCATGTTGCGTTTC 147867 ||| || |||| | ||||| ||||| ||| ||| || ||| | || || ||| Sbjct 451093 CCAAAGGCCGTAGAAGAGATCCCGCGCACGTTG--ATCATCCTTACCCGTATTACGCTTC 451150 Query 147868 AAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC 147926 | | || | | | | | ||||| ||||||||||| || | ||||| || | ||||| Sbjct 451151 AGCATCAGAAACTCGAAA-ATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACC 451209 Query 147927 TTTACGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCAT 147983 || ||||| ||| ||||| || || | ||| | ||||||| |||||||||| ||| Sbjct 451210 CTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCAT 451269 Query 147984 GGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCAC 148043 ||| | || ||| | | ||| || || ||| | || | ||| || || || | Sbjct 451270 GGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATATAGCTTCCAGAGGAACGGAT 451329 Query 148044 TTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA 148103 | ||| |||| | ||||| || ||| | |||| || | ||||| || || Sbjct 451330 GTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAG 451389 Query 148104 TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACAT 148163 || ||||||||| || ||||| || | || | | | | ||| ||||| | ||| Sbjct 451390 GGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTCAT 451449 Query 148164 TTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAAT--TTT 148221 ||| || |||| || || ||| || || || | ||||| || || ||| || Sbjct 451450 TTGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCCTT 451509 Query 148222 TGACTCATCATGCGATACGTCTCAA--TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCA 148279 || ||||| ||| || || | | ||| | | || | || ||||| || | Sbjct 451510 GGA--CATCAATTCATAGGT-TCGAGCCACTTTCTCCAAGTTCCT-TCCATGAATCCCAA 451565 Query 148280 GCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 | ||||| |||| || ||||||||| || || || Sbjct 451566 GTGCGACACGCAGGATCATGTGCTGAGGGCGCTC 451599 >seq11 Length=2034363 Score = 120 bits (132), Expect = 3e-22 Identities = 367/549 (67%), Gaps = 29/549 (5%) Strand=Plus/Plus Query 46738 TGCTGAATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAG 46796 |||| ||||| || || ||| | |||||| | | || ||||| |||||| || | Sbjct 1272944 TGCTACATGCGATCCAG-ACGATTCCATGCATCCAAAAGAAGGCTGCGTGGGCGGTGCGG 1273002 Query 46797 TGGATCGAGAGCGAGACCGCCACGCTGGCCG-AGCGCATGGTGGCATTCGCGATAGTCGA 46855 ||||||| ||||||| | || ||| | | |||| |||| || || || ||||| Sbjct 1273003 TGGATCGGGAGCGAG---GTCA-GCTTCCAGGAGCGTCTGGTCGCGTTTGCAGCTGTCGA 1273058 Query 46856 AGGCGTGtttttttC-GGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAA 46914 ||| | || ||||| ||| |||||| || | || | |||| | ||| | | Sbjct 1273059 GGGCATCTTCTTTTCAGGGTCATTTTGC-GCACTGTTCTGGCTTAAGAAGCGCGGCGTGA 1273117 Query 46915 TGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACT 46974 |||| || || || ||||| |||||| |||||||||||||||| || || |||||||||| Sbjct 1273118 TGCCCGGGCTAACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 1273177 Query 46975 TTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACT----CGGACACG-AT 47029 ||||||| || ||| |||||| | | || | || || ||| | || | Sbjct 1273178 TTGCGTGCCTGCTGTAC---ACGCGCCACATTAAGCA--CAAGCTGCCGCGGTCGCGCGT 1273232 Query 47030 CCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTG 47087 ||| || | | ||| |||||| |||||| | ||||| | ||||| || ||| Sbjct 1273233 GCTGGAGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCAT--CTGCGACGCACTG 1273290 Query 47088 CCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGC 47146 || || || | || | || |||||| | || ||| | | || || |||||||| || Sbjct 1273291 CCAGTGCGGC-TGATCGGGATGAACTCGGAGCTGATGGGGCAGTACATCGAGTTTGTTGC 1273349 Query 47147 GGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCG--TAATCCGTTT 47204 ||| || ||| | || ||| || | ||| | | || |||| ||||| || Sbjct 1273350 GGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAAGCACTACAA--CTCGGCGAATCCATTC 1273407 Query 47205 GAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGA 47264 || || ||| | | || ||||| ||||||| ||||| || |||||||| || || Sbjct 1273408 GACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGAAGGTTGGC 1273467 Query 47265 GAGTATAAG 47273 |||||| || Sbjct 1273468 GAGTATCAG 1273476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610628066560