Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 217 2e-50 seq96 132 7e-25 seq1 102 1e-15 seq24 96.9 5e-14 seq22 95.1 2e-13 >seq11 Length=2034363 Score = 217 bits (240), Expect = 2e-50 Identities = 409/596 (69%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||| || || |||||| |||| || || |||||||| || | || || Sbjct 1272573 CGAGCCGCTGCAGCAGGAGAACCCGTACCGGTTCGTGCTGTTCCCGATTCAGTATCACGA 1272632 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||| | |||| || || ||| || | | ||||| | |||||| |||||| Sbjct 1272633 CATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACC 1272691 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| |||| ||| | |||||| ||||| ||| | ||||| || |||||||||| Sbjct 1272692 TGGGCAGTGACATGGTGGATTGGGTGAAGCTGAACGATGGGGAGCGACACTTCATCAAGC 1272751 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||| || ||||| | ||||| ||||||||| ||||||||| || ||| Sbjct 1272752 ACGTGCTCGCC-TTCTTCGCGGGAAGCGACGGCATCGTGATCGAGAACCTCGCACAGCGC 1272810 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||| || || | | || ||||| ||| ||| || ||||| ||| | || Sbjct 1272811 TTCATGACCGACGTGAAGATACCGGAGGCGCGTGCGTTCTATGGGTTTCAGCTGATGATG 1272870 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || || |||||||| || | |||||| | || | ||||| ||| ||| |||| | | Sbjct 1272871 GAGAATATCCACTCGGAGGCGTACTCGGTGATGCTGGACACATACATCATGGACACTGAG 1272930 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | | | || ||| | ||| | || | | || ||||| | Sbjct 1272931 GAAAAGCTCCGCATGCTACATGCGATCCAGACGATTCCATGCATCCAAAAGAAGGCTGCG 1272990 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 |||||| || ||||||| | |||| | ||| ||||| || |||| | Sbjct 1272991 TGGGCGGTGCGGTGGATCGGGAGCGAGGTC-----AGCTTCCAGGAGCGTCTGGTCGCGT 1273045 Query 1456195 TTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 |||| || |||||||||||||| || || || || ||||| | || ||||| |||| Sbjct 1273046 TTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTGCGCACTGTTCTGGCTTAAGA 1273105 Query 1456254 AGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| | |||||||| | | ||| |||||||| | ||| |||||||| Sbjct 1273106 AGCGCGGCGTGATGCCCGGGC-TAACCTTCAGCAACGAGCTGATCTCGCGCGACGA 1273160 Score = 141 bits (156), Expect = 1e-27 Identities = 212/294 (72%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCG 1456508 ||||| |||||||| || ||||| |||||| | | | || ||||| | || | | Sbjct 1273166 TGCACACGGACTTTGCGTGCCTGCTGTACACGCGCCACATTAAGCACAAGCTGCCG-CGG 1273224 Query 1456509 ACGTGCCCAA-GCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 || || | |||||||| || || || || |||||| | ||||| || |||| Sbjct 1273225 TCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCATCTGCGAC 1273284 Query 1456568 TCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 | ||||| ||| ||| ||||| |||||| | ||| ||| | |||||||| || || Sbjct 1273285 GCACTGCCAGTGCGGCTGATCGGGATGAACTCGGA-GCTGATGGGGCAGTACATCGAGTT 1273343 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 | || || ||||||||||||| ||||| || | ||||||||||||| |||| || Sbjct 1273344 T-GTTGCGGACCGCCTGCTCGTTGCGCTTGGG-GAGGAGAAGCACTACAACTCGGCGAAT 1273401 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || ||| | |||||| |||||||||| |||||||||||||||| |||||| Sbjct 1273402 CCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAG 1273455 >seq96 Length=723174 Score = 132 bits (146), Expect = 7e-25 Identities = 224/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 259866 TGGAGCACGTG-CTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACG 259924 ||||| | ||| |||| ||||| || ||||| || || |||||| || || Sbjct 451544 TGGAGAAAGTGGCTCGA-ACCTATGAATTGATGTCCAAGGGATTCTTCACCCACGCCACA 451486 Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG-TCGTGCTTTCTGTTGGA 259983 || |||||||| || || |||||||| || || || ||| | ||||||||||| | | Sbjct 451485 CCGACGCTCTTCAACGCTGGCACGCCACGGCCCCA-AATGAGCTCGTGCTTTCTCATAGC 451427 Query 259984 CATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTC 260043 ||||||| ||| || ||||||||||| ||||| || ||| ||||||| | ||| Sbjct 451426 TATGAAGGAGGATAGCATTGAGGGCATCTACGACACCCTGAAGGAGTGCGCCGTGATCAG 451367 Query 260044 CAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGT 260103 ||| | ||||| || || || | || ||||| | || || | || ||| | Sbjct 451366 TAAGTCAGCCGGTGGGATTGGGCTGCACGTTCACAACATCCGTTCCTCTGGAAGCTATAT 451307 Query 260104 GGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACAC 260163 || ||||| || || |||||||| || ||||||||||| ||||| || ||| |||| Sbjct 451306 TGCTGGCACAAATGGGACTTCCAACGGTCTCGTGCCCATGCTGCGCGTGTTCAACAACAC 451247 Query 260164 GGCGCGCTACGTCGACCAG 260182 || |||||||| || ||| Sbjct 451246 CGCCCGCTACGTTGATCAG 451228 Score = 87.8 bits (96), Expect = 3e-11 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATG 263232 || ||||||||||| | |||||| || |||||| | | | |||| ||| | ||| Sbjct 450063 GACCTCAAGGCTCTTTACAAGACTGTCTGGGAGATTTCACAGCGGGATCTGATTCAGATG 450004 Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292 || || ||||| | | || | ||||| |||||| || ||||| | | | | | Sbjct 450003 GCCGCTGACCGTGGGAAGTACATTGACCAATCCCAGTCTCTGAACCTCTTCATGGAAAAA 449944 Query 263293 CCGACGGCCGAGAGCATCACGTCGATGCACGCCTA-TGCGTGGCGTCGCGGCCTCAAGAC 263351 || | ||| | |||| ||||| ||||| ||| ||| || | ||||||||||| Sbjct 449943 CCCTCCTCCGGGCGCATAACGTCCATGCATTTCTACTGCTGGGAAATG-GGCCTCAAGAC 449885 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCAT 263393 ||||||||||| || ||||| || || || ||| ||||||| Sbjct 449884 GGGCATGTACTACCTTCGCACGCGCCCAGCCGCCGACGCCAT 449843 >seq1 Length=634488 Score = 102 bits (112), Expect = 1e-15 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1816042 GTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAG 1816101 |||| |||||| |||| ||| ||| || || ||||| ||||| |||||| Sbjct 477122 GTCGAGGCCGTCCTCGCCGTATCGCGTCTGCACGATCGCGCCGCGCGCGTTTCGCACGGT 477063 Query 1816102 GCCGCCGCGCTTGATCTGC-AGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGC 1816160 |||| || | | | || ||||||||||||| |||| || ||||| | |||||||| Sbjct 477062 GCCGTCGTAGTGCA-CGGCGAGGCTCTCCATCGCCTTGCTGAGGCGGCGGTAGATGTAGC 477004 Query 1816161 CACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGC 1816219 | |||| |||||||||| || ||||| || || || ||||||||||| | ||| |||| Sbjct 477003 C-CGTCTCGGCGGTCTTCACCGCCGTATCCACGAGCCCCTCGCGGCCCGCCATCGTGTGG 476945 Query 1816220 AAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGG 1816276 || || | |||| || | ||| ||| | | | | | | ||||| || |||||| Sbjct 476944 AAGAAGAACTCGGTCGGGGCGAGCCCGTCGTAGAAGGCGCTCCGCACGAACCCGCGG 476888 >seq24 Length=44238 Score = 96.9 bits (106), Expect = 5e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1818090 TCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAATGTCAATC 1818149 || || ||||| |||||| | | ||| | |||||||||| ||||| || | |||||| Sbjct 32993 TCCGGGAAGGTCAGCGTCGCGGCAATCGAAAAGGGCACGCCAACCTCATCCACGTCAATA 33052 Query 1818150 TCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCATGCAATTG 1818209 | || || ||||||||| |||| || || | ||||||||||||||| |||| Sbjct 33053 TTCGGATCCCCCGTGATGACGGTTCGCGAGGAGAAATCGACGCGCTTGCCCATTAAATTC 33112 Query 1818210 CCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 || |||| |||||| | |||||| || | |||||| Sbjct 33113 CCTCGGAGCCTGCCATACTTGCCTTTAAGACGCTCC 33148 >seq22 Length=1603200 Score = 95.1 bits (104), Expect = 2e-13 Identities = 334/500 (67%), Gaps = 25/500 (5%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| || | ||| | |||||| ||||| |||||||||| ||||| ||| Sbjct 602295 CTCCATCTCGCCGACGCGCAGGCCGCCGCTGCGCGCGCGGCCCTCGGTGGGCTGTCGGGT 602354 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGT-CGGGCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376 ||||||| | || |||| || | || ||||| ||||||||| | ||| || | Sbjct 602355 GAGCATCGAG-CGCGGCCCGGTCGCGCGCGCGTGCATCTTGTCGGTCACCATATGCTTTA 602413 Query 1600377 GGGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTGT-G 1600434 | ||| || |||| || |||| | |||| || || ||| | ||||||| | | Sbjct 602414 GCCGCTGATAATAGAGGGG-GCCGAAGAAGACGAAGCCCGGCATCGCCTCGCCGCTCACG 602472 Query 1600435 CGGGTGGTAGAGCACCTCCTTGCCGTAGC-GCTCGCATCCGTG-GCGAGCCAACTCGGCG 1600492 | || | |||| | |||||||||| | ||| ||| || | ||||| | ||||| Sbjct 602473 CCGGAG-TAGAAGAGGTCCTTGCCGTGGTAGCT-GCAGCCCCGCGCGAGG--AGGCGGCG 602528 Query 1600493 GC-GACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACAT-----AGCCC 1600546 || || | ||| ||| | ||||| | || | ||||||||||| || ||||| Sbjct 602529 GCCGAGGGCCTCGGCGGGGTCGCCGGCGAACGCGGTGCCGTCGCCGACCCGCCCGAGCCC 602588 Query 1600547 TCGC--GGCAGGCCACCTT-GCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGC 1600603 | | ||| | || |||| || ||| | || || | || |||||| | ||||||||| Sbjct 602589 GCCCACGGCCG-CCGCCTTCGCGCAGACGAGC-TCGAGCAGCTTGCCGACGGTCATGCGG 602646 Query 1600604 GACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAG 1600663 ||||| | |||| ||||| || | ||||| || | ||| || | || || Sbjct 602647 CTCGGGAAGCCGTGGGGGTTCATGATCATGTCCGGGCTCATGCCGA-GCTCGTTGA--AG 602703 Query 1600664 GGCATGTCCTCGGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGAC 1600723 |||||||| ||| | | | | || ||| ||| || ||||||||||| || || Sbjct 602704 GGCATGTCGACGGCGTCGGCGATGAGCCCGACGACGCCTTTCTGGCCGTGGCGGGAGGAG 602763 Query 1600724 AGTTTGTCGCCCACCTCGGG 1600743 | ||||||||| ||| || Sbjct 602764 AACTTGTCGCCCGGCTCCGG 602783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177801940623552