Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq96 114 1e-20 seq44 107 2e-18 seq88 104 2e-17 seq11 87.8 2e-12 >seq96 Length=723174 Score = 114 bits (126), Expect = 1e-20 Identities = 262/391 (67%), Gaps = 5/391 (1%) Strand=Plus/Minus Query 7698 GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTA 7757 ||| ||| || |||||| ||| | || | ||| || || ||||| || ||||| || Sbjct 451456 GCCCCAAATGAGCTCGTGCTTTCTCATAGCTATGAAGGAGGATAGCATTGAGGGCATCTA 451397 Query 7758 CAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGT 7817 | |||| ||| || |||||| || || | | ||| || || || ||| |||| Sbjct 451396 CGACACCCTGAAGGAGTGCGCCGTGATCAGTAAGTCAGCCGGTGGGATTGGGCTGCACGT 451337 Query 7818 AAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTT 7877 || || | || || || ||| || | ||| || || | ||| |||| | Sbjct 451336 TCACAACATCCGTTCCTCTGGAAGCTATATTGCTGGCACAAATGGGACTTCCAACGGTCT 451277 Query 7878 AGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAG---GGGGGAAA 7934 | ||||||| ||||||||||||| ||| | | || | || || ||| || || || Sbjct 451276 CGTGCCCATGCTGCGCGTGTTCAACAACACCGCCCGCTACGTTGATCAGGGTGGCGGTAA 451217 Query 7935 GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCT 7994 |||||| || ||| ||| ||||| ||||||| |||||||| ||||||| || | || Sbjct 451216 GCGCAAGGGTGCCTTTGCGGTCTATCTGGAGCCCTGGCACGCTGACATTTTCGAGTTTCT 451157 Query 7995 AAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGAT 8053 | ||| || || | |||| || || || | ||||| ||||| |||| ||| Sbjct 451156 GATGCTGAAGCGTAATACGGGTAAGGATGATCAAC-GTGCGCGGGATCTCTTCTACGGCC 451098 Query 8054 TGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 | ||| | |||||||| || |||| ||| || Sbjct 451097 TTTGGATACCCGATCTCTTCATGAAGCGTGT 451067 >seq44 Length=1445935 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 1049978 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1050037 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| ||||||||| || ||||| Sbjct 1050038 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 1050097 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | |||||| | ||||| Sbjct 1050098 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 1050157 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 ||||| | || || || || || | || || ||||| || ||||||| Sbjct 1050158 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTT 1050206 >seq88 Length=784127 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 682523 CCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682464 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| ||||||||| || ||||| Sbjct 682463 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682404 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | |||||| | ||||| Sbjct 682403 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682344 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || || || || | || || ||||| || ||||| Sbjct 682343 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 683028 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682969 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| ||||||||| || ||||| Sbjct 682968 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682909 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | |||||| | ||||| Sbjct 682908 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682849 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || || || || | || || ||||| || ||||| Sbjct 682848 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 >seq11 Length=2034363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 21718 AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTG 21777 || || ||||| | ||||||| |||||||||||||| |||| ||||||||||| || Sbjct 1273187 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTT 1273128 Query 21778 AGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTA-CCGGaaaa 21836 || |||||||| | || || || |||| | || | || |||||| | || ||||| Sbjct 1273127 AGCCCGGGCATCACGCCGCGCTTCTTAAGCCAGAACAGTG-CGCAAAATGACCCTGAAAA 1273069 Query 21837 aaaCACGCCCTCCACAATGGCGAACGCCACCA 21868 || | |||||| ||| || ||||| |||| Sbjct 1273068 GAAGATGCCCTCGACAGCTGCAAACGCGACCA 1273037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397793521920